View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0819_low_31 (Length: 274)
Name: NF0819_low_31
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_low_31 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-107; HSPs: 8)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 30 - 262
Target Start/End: Complemental strand, 11424452 - 11424208
Alignment:
| Q |
30 |
aaaaagccatgctctaaacaaatatgggatgataccaatgagacattgattccacatgtcaaagttccaa------------agccaccaaactatatag |
117 |
Q |
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| T |
11424452 |
aaaaagccatgctctaaacaaatatgggatgataccaatgagacattgattccacatgtcaaagttccaagtagttagctggagccaacaaactatatag |
11424353 |
T |
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| Q |
118 |
aagaaagatcttcatatatagtcttgattccaggcctttcagaaacagatcgaatacatcgaattgctattcctaggacctccttcattcccttttctac |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11424352 |
aagaaagatcttcatatatagtcttgattccaggcctttcagaaaccgatcgaatacatcgaattgctattcctaggacctccttcattcccttttctac |
11424253 |
T |
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| Q |
218 |
aactggatttcccatttccgacatcaaagttgcatcgaaacattc |
262 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11424252 |
aactggatttcccatttccgacatcaaagttgcatcgaaacattc |
11424208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 147 - 262
Target Start/End: Original strand, 9322798 - 9322913
Alignment:
| Q |
147 |
ccaggcctttcagaaacagatcgaatacatcgaattgctattcctaggacctccttcattcccttttctacaactggatttcccatttccgacatcaaag |
246 |
Q |
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|||||||||| |||||| |||| |||||||||||| ||||||||| |||||| ||| || |||| ||||||||||||||||||||||| ||||||||| |
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| T |
9322798 |
ccaggcctttaagaaaccgatccaatacatcgaatcactattcctaagacctcattcttttccttctctacaactggatttcccatttctaacatcaaag |
9322897 |
T |
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| Q |
247 |
ttgcatcgaaacattc |
262 |
Q |
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| T |
9322898 |
ttgcatcgaaacattc |
9322913 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 184 - 262
Target Start/End: Original strand, 32304268 - 32304346
Alignment:
| Q |
184 |
ctattcctaggacctccttcattcccttttctacaactggatttcccatttccgacatcaaagttgcatcgaaacattc |
262 |
Q |
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| T |
32304268 |
ctattcctatgacctccttcattcccttttctacaactagatttcccatttctgacatcaaagttgcatcaaaacattc |
32304346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 165 - 262
Target Start/End: Original strand, 9330828 - 9330925
Alignment:
| Q |
165 |
gatcgaatacatcgaattgctattcctaggacctccttcattcccttttctacaactggatttcccatttccgacatcaaagttgcatcgaaacattc |
262 |
Q |
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|||| |||| ||||||| ||||||||||||||||| ||||||||||||||||||| | ||||||||||||| || |||||| ||||||||||||||| |
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| T |
9330828 |
gatcaaatatatcgaatcgctattcctaggacctcattcattcccttttctacaattagatttcccatttctaacgtcaaagctgcatcgaaacattc |
9330925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 189 - 261
Target Start/End: Complemental strand, 11425708 - 11425636
Alignment:
| Q |
189 |
cctaggacctccttcattcccttttctacaactggatttcccatttccgacatcaaagttgcatcgaaacatt |
261 |
Q |
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| T |
11425708 |
cctaggacctccttcattcccttttctacaactggattccccatttctaacatcaaagtagcatcaaaacatt |
11425636 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 142
Target Start/End: Complemental strand, 11425840 - 11425713
Alignment:
| Q |
30 |
aaaaagccatgctctaaacaaatatgggatgataccaatgagacattgattcc----acatgtcaaagttccaa------------agccaccaaactat |
113 |
Q |
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|||||||||||| ||||||||||| | |||||||||||||||||||||||||| ||||||| ||||||||| |||||||||||||| |
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| T |
11425840 |
aaaaagccatgccctaaacaaatacgagatgataccaatgagacattgattcccatgacatgtc-aagttccaagtagttagcatgagccaccaaactat |
11425742 |
T |
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| Q |
114 |
atagaagaaagatcttcatatatagtctt |
142 |
Q |
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|||||||||| |||||||| ||||||||| |
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| T |
11425741 |
atagaagaaatatcttcatgtatagtctt |
11425713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 30 - 81
Target Start/End: Original strand, 9322707 - 9322758
Alignment:
| Q |
30 |
aaaaagccatgctctaaacaaatatgggatgataccaatgagacattgattc |
81 |
Q |
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||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |
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| T |
9322707 |
aaaaagccatgctctaaacaaatatgggatggtaccaataagacatcgattc |
9322758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 9330753 - 9330791
Alignment:
| Q |
29 |
aaaaaagccatgctctaaacaaatatgggatgataccaa |
67 |
Q |
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||||||| |||||||||||||||||||||||| |||||| |
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| T |
9330753 |
aaaaaagtcatgctctaaacaaatatgggatggtaccaa |
9330791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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