View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0819_low_32 (Length: 273)
Name: NF0819_low_32
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_low_32 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 50 - 238
Target Start/End: Complemental strand, 32317401 - 32317213
Alignment:
| Q |
50 |
cacaacagacctaagcatgtacaatctatcattgagtttcttcctcctgcgcctctcagccatcaaattcttcgctggaagccccttcttcttctttccc |
149 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32317401 |
cacaacagacctaagcatgtacaatctatcattgagtttcttcctcctgcgcctctcagccatcaaattcttcgctggaagccccttcttcttctttccc |
32317302 |
T |
|
| Q |
150 |
ttctgatctccaccagtaacaacagtcccatttgaattattcaaatcattcccattctcatcagaatcataattcaactcagaataatc |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32317301 |
ttctgatctccaccagtaacaacagtcccatttgaattattcaaatcattcccattctcatcagaatcataattcaactcagaaaaatc |
32317213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 185
Target Start/End: Complemental strand, 8187845 - 8187762
Alignment:
| Q |
102 |
ctctcagccatcaaattcttcgctggaagccccttcttcttctttcccttctgatctccaccagtaacaacagtcccatttgaa |
185 |
Q |
| |
|
|||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||||| | |||||||||||||| |||||| |
|
|
| T |
8187845 |
ctctcagccatcaaattcttagcaggaagccctttcttcttcttccccttctgatctccatcggtaacaacagtcccgtttgaa |
8187762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 5725 times since January 2019
Visitors: 5758