View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0819_low_35 (Length: 257)
Name: NF0819_low_35
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_low_35 |
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Alignment Details
Target: chr2 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 4 - 252
Target Start/End: Original strand, 45198459 - 45198707
Alignment:
| Q |
4 |
cataataagtttttcacagtcattatatctataaaataatctaccaaacttcttatggttattcatcacaatcaatagtttttcatgcatgtctcaagaa |
103 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45198459 |
cataataagtttttcacagtcattttatctataaaataatctaccaaacttcttatggttattcatcacaatcaatagtttttcatgcatgtctcaagaa |
45198558 |
T |
|
| Q |
104 |
ccaccctagctagtagatttcacaatgctaaagttcgaatgctcagctagaagttacaaacctcttttggatcactcaacattcctacaatgcaagcatc |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
45198559 |
ccaccctagctagtagatttcacaatgctaaagttcgaatgctcagctagaagttacaaacctcttttggatcactcaacattcctacaatgcaagcatc |
45198658 |
T |
|
| Q |
204 |
aatagcgtcttggttctccaccctagaggctctagctccaagcaaaatt |
252 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
45198659 |
aatagcatcttggttctccaccctagaggctctagctccaagcaaaatt |
45198707 |
T |
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