View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0819_low_38 (Length: 247)
Name: NF0819_low_38
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_low_38 |
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| [»] chr2 (1 HSPs) |
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| [»] chr8 (1 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 3 - 247
Target Start/End: Original strand, 45197974 - 45198218
Alignment:
| Q |
3 |
tggaggaacagagagaggcaatagaccgacaaacgtccacggtcctcctgaactctccttgcttttttctggcacttcctaaaaagtatgcataattcct |
102 |
Q |
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| T |
45197974 |
tggaggatcaaagagaggcaatagaccgacaaacgtccacggtcctcctgaactctccttgcttttttctggcacttcctaaaaagtatgcataattcct |
45198073 |
T |
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| Q |
103 |
cataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagcaagggaacggagaccgcgtt |
202 |
Q |
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| T |
45198074 |
cataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaataaaagcttacttgtttgccaacagcaagggaacggagaccgcgtt |
45198173 |
T |
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| Q |
203 |
cagcaaatttatcaataatggaaatagctttcctcttcacatctt |
247 |
Q |
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| T |
45198174 |
cagcaaatttatcaataatggaaatagctttcctctttacatctt |
45198218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 83 - 247
Target Start/End: Complemental strand, 30340921 - 30340757
Alignment:
| Q |
83 |
aaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagc |
182 |
Q |
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| T |
30340921 |
aaaaaatatgcataattcctcataaaaatttattttgattcattcaatcataagtcatcattaataagaagtaagaaaagcttacttgtttaccaacagc |
30340822 |
T |
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| Q |
183 |
aagggaacggagaccgcgttcagcaaatttatcaataatggaaatagctttcctcttcacatctt |
247 |
Q |
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| T |
30340821 |
aagggaagagagactgcgttcagcaaatttgtcaataatggaaatagctctccttctcacatctt |
30340757 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 83 - 247
Target Start/End: Original strand, 18988851 - 18989015
Alignment:
| Q |
83 |
aaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagc |
182 |
Q |
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||||| |||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
18988851 |
aaaaaatatgcataattcctcataaaaatttattttgattcattcaatccaaagtcatcattaataagaagtaagaaaagcttatttgtttaccaacagc |
18988950 |
T |
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| Q |
183 |
aagggaacggagaccgcgttcagcaaatttatcaataatggaaatagctttcctcttcacatctt |
247 |
Q |
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||||||| ||||| | |||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
18988951 |
aagggaagagagactgtgttcagcaaatttatcaataatggaaatagctctccttctcacatctt |
18989015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 117; Significance: 1e-59; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 83 - 247
Target Start/End: Complemental strand, 23916671 - 23916508
Alignment:
| Q |
83 |
aaaaagtatgcataattcctcataaaaacttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttacttgtttgccaacagc |
182 |
Q |
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||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||| |
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| T |
23916671 |
aaaaaatatgcataattcctcataaaat-ttattttgattcattcaatcaaaagtcatcattaataagaagtaagaaaagcttatttgtttaccaacagc |
23916573 |
T |
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| Q |
183 |
aagggaacggagaccgcgttcagcaaatttatcaataatggaaatagctttcctcttcacatctt |
247 |
Q |
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||||||| ||||| |||||||||||||||||||||||||||||||||| |||| ||||||||| |
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| T |
23916572 |
aagggaagagagactgcgttcagcaaatttatcaataatggaaatagctctccttctcacatctt |
23916508 |
T |
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