View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0819_low_4 (Length: 493)

Name: NF0819_low_4
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0819_low_4
NF0819_low_4
[»] chr6 (13 HSPs)
chr6 (3-482)||(6497462-6497941)
chr6 (3-482)||(6460731-6461210)
chr6 (99-398)||(6519576-6519875)
chr6 (99-254)||(6529216-6529371)
chr6 (94-250)||(6506507-6506663)
chr6 (94-247)||(6472041-6472194)
chr6 (94-257)||(6466347-6466510)
chr6 (93-257)||(6515089-6515253)
chr6 (351-427)||(6506318-6506394)
chr6 (138-226)||(7204154-7204242)
chr6 (138-226)||(7238905-7238993)
chr6 (325-431)||(6472284-6472390)
chr6 (141-223)||(6458424-6458506)
[»] chr7 (3 HSPs)
chr7 (105-259)||(9664312-9664466)
chr7 (94-223)||(3752829-3752958)
chr7 (141-250)||(4047253-4047362)
[»] chr4 (1 HSPs)
chr4 (105-259)||(13535336-13535490)


Alignment Details
Target: chr6 (Bit Score: 448; Significance: 0; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 448; E-Value: 0
Query Start/End: Original strand, 3 - 482
Target Start/End: Complemental strand, 6497941 - 6497462
Alignment:
Q  3 catctccaacaatatcaccaaaaatagatatttactatcaacaacaaaatgagctctccttttccaatgacagatccaagttcaactattatcccagacc 102  Q
    |||| ||||||  ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  6497941 catcaccaacacaatcaccaaaaatagagatttactatcaacaacaaaatgagctctccttttccaatgacagattcaagttcaactattatcccagacc 6497842  T
Q  103 cctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattt 202  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497841 cctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattt 6497742  T
Q  203 tcatccttacctcatcaaatcatcagactcatcactttctgtttcatatccatctatttccatcagcccttctgctatatctcaagttttcactgctgat 302  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497741 tcatccttacctcatcaaatcatcagactcatcactttctgtttcatatccatctatttccatcagcccttctgctatatctcaagttttcactgctgat 6497642  T
Q  303 cttaccatcacttccgctacgaaaacatccaatgaaaaacatgtagtatcttcttttagtgatctcggtgtcaccttagatatcccttcttcaaatctca 402  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6497641 cttaccatcacttccgctacgaaaacttccaatgaaaaacatgtagtatcttcttttagtgatctcggtgtcaccttagatatcccttcttcaaatctca 6497542  T
Q  403 ccttcttccttgtaagaggaagtccctttttaactttctttgtggcagattcaacacctctttccatcactactattcat 482  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  6497541 ccttcttccttgtaagaggaagtccctttttaactttctttgtagcagattcaacacctctttccataactactattcat 6497462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 3 - 482
Target Start/End: Original strand, 6460731 - 6461210
Alignment:
Q  3 catctccaacaatatcaccaaaaatagatatttactatcaacaacaaaatgagctctccttttccaatgacagatccaagttcaactattatcccagacc 102  Q
    |||| ||||||  ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |  |||| ||||    
T  6460731 catcaccaacacaatcaccaaaaatagagatttactatcaacaacaaaatgagctctccttttccaatgatagatccaagttccactgtcctccctgacc 6460830  T
Q  103 cctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattt 202  Q
    |||||||||||||||||  |||||||||||| ||||| ||||| |||||||| ||||||||||||||||||||| |||| ||||||||||| ||||| ||    
T  6460831 cctccaaattcttctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaatggtgaccaaccggaatactt 6460930  T
Q  203 tcatccttacctcatcaaatcatcagactcatcactttctgtttcatatccatctatttccatcagcccttctgctatatctcaagttttcactgctgat 302  Q
    ||||||||||||||||| ||| ||  ||||||| |||||||| |||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||    
T  6460931 tcatccttacctcatcagatcttccaactcatctctttctgtctcatatccatctctttccatcagcccttctgctatatcccaagttttcactgctgat 6461030  T
Q  303 cttaccatcacttccgctacgaaaacatccaatgaaaaacatgtagtatcttcttttagtgatctcggtgtcaccttagatatcccttcttcaaatctca 402  Q
    ||||||||||||||| |||| ||||| |||||||||||||||||||| ||||| |||||||||||| ||||||||||||||||||||||| | || ||||    
T  6461031 cttaccatcacttcctctacaaaaacttccaatgaaaaacatgtagtctcttcctttagtgatctcagtgtcaccttagatatcccttctgccaacctca 6461130  T
Q  403 ccttcttccttgtaagaggaagtccctttttaactttctttgtggcagattcaacacctctttccatcactactattcat 482  Q
    ||||||||||||||||||||||||| ||||||||||||| |||| |||| |||||||||||||| |||||||||||||||    
T  6461131 ccttcttccttgtaagaggaagtccttttttaactttctctgtgacagaatcaacacctctttctatcactactattcat 6461210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 99 - 398
Target Start/End: Original strand, 6519576 - 6519875
Alignment:
Q  99 gacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaat 198  Q
    |||||||||||||||||||||  |||| | ||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  6519576 gacccctccaaattcttctctccaaatttactatccaaacccctccctacaaactctttcttccaaaactttgttctcaaaaacggtgaccaacctgaat 6519675  T
Q  199 attttcatccttacctcatcaaatcatcagactcatcactttctgtttcatatccatctatttccatcagcccttctgctatatctcaagttttcactgc 298  Q
    || ||||||| |||||||| ||||||||| ||||||||||||||||||| || |||||   || | | | | |||||| |||||| |||||||||| |||    
T  6519676 atattcatccatacctcattaaatcatcaaactcatcactttctgtttcttacccatcacgtttcttaaactcttctgttatatcccaagttttcaatgc 6519775  T
Q  299 tgatcttaccatcacttccgctacgaaaacatccaatgaaaaacatgtagtatcttcttttagtgatctcggtgtcaccttagatatcccttcttcaaat 398  Q
    |||||||||||| |||||  |||| ||||| ||||| ||||||||  || | |||||||  | ||| ||| |||| ||||| || |||||||||||||||    
T  6519776 tgatcttaccataacttcttctacaaaaacttccaacgaaaaacacataatctcttcttacaatgacctcagtgttaccttggaaatcccttcttcaaat 6519875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 1e-51
Query Start/End: Original strand, 99 - 254
Target Start/End: Complemental strand, 6529371 - 6529216
Alignment:
Q  99 gacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaat 198  Q
    |||||||||||||||||||||  |||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6529371 gacccctccaaattcttctctccaaatctgctatccacacccctccctacaaactctttcttccaaaactttgttctcaacaatggtgaccaacctgaat 6529272  T
Q  199 attttcatccttacctcatcaaatcatcagactcatcactttctgtttcatatcca 254  Q
    |  ||||||| || ||||||||||| |||||||||||||||||| |||| ||||||    
T  6529271 acattcatccatatctcatcaaatcttcagactcatcactttctatttcctatcca 6529216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 7e-50
Query Start/End: Original strand, 94 - 250
Target Start/End: Complemental strand, 6506663 - 6506507
Alignment:
Q  94 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 193  Q
    |||| |||||||||||||||||||||  |||||||||||| | |||||| || ||||||||||||||||||||||||||||||||||| |||||   |||    
T  6506663 tccctgacccctccaaattcttctctccaaatctgctatccacacccctgcctacaaactctttcttccaaaactttgttctcaacaatggtgatgcacc 6506564  T
Q  194 tgaatattttcatccttacctcatcaaatcatcagactcatcactttctgtttcata 250  Q
    |||||| ||||||||||||||||||||||||||| |||||||||||||||| |||||    
T  6506563 tgaatactttcatccttacctcatcaaatcatcaaactcatcactttctgtctcata 6506507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 94 - 247
Target Start/End: Original strand, 6472041 - 6472194
Alignment:
Q  94 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 193  Q
    |||| ||||||||||||||||||||   |||| ||||||| | ||||||||| ||||||||||||||||||||| |||| || || || |||||||||||    
T  6472041 tccctgacccctccaaattcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaaacattgtcctaaaaaatggtgaccaacc 6472140  T
Q  194 tgaatattttcatccttacctcatcaaatcatcagactcatcactttctgtttc 247  Q
    ||||||  |||||||||||||||||||||||||| |||||||||||||||||||    
T  6472141 tgaatacattcatccttacctcatcaaatcatcaaactcatcactttctgtttc 6472194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 94 - 257
Target Start/End: Complemental strand, 6466510 - 6466347
Alignment:
Q  94 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 193  Q
    |||| |||||| | || |||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  6466510 tccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacc 6466411  T
Q  194 tgaatattttcatccttacctcatcaaatcatcagactcatcactttctgtttcatatccatct 257  Q
    ||||||  ||||||| || ||||||||||| ||| |||||||||||||| |||| || ||||||    
T  6466410 tgaatacattcatccatatctcatcaaatcttcaaactcatcactttctctttcttacccatct 6466347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 93 - 257
Target Start/End: Original strand, 6515089 - 6515253
Alignment:
Q  93 atcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaac 192  Q
    ||||| || |||||||| ||||||||   |||||| ||||||| ||||||||||||||||||||||||||||||||||  |||||   | |||||   ||    
T  6515089 atccctgatccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacac 6515188  T
Q  193 ctgaatattttcatccttacctcatcaaatcatcagactcatcactttctgtttcatatccatct 257  Q
    |||||||  | |||||||||||||||| |||| || |||||||||||||| ||||||| ||||||    
T  6515189 ctgaatacatccatccttacctcatcagatcaacaaactcatcactttctttttcatacccatct 6515253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 351 - 427
Target Start/End: Complemental strand, 6506394 - 6506318
Alignment:
Q  351 tcttcttttagtgatctcggtgtcaccttagatatcccttcttcaaatctcaccttcttccttgtaagaggaagtcc 427  Q
    ||||||| ||||||||||||||| ||||||||||||||||||||||||||||  ||||| ||||| |||||||||||    
T  6506394 tcttcttatagtgatctcggtgttaccttagatatcccttcttcaaatctcagtttctttcttgttagaggaagtcc 6506318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 7204154 - 7204242
Alignment:
Q  138 cccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaatcatc 226  Q
    ||||||||||| |  ||||||||||||||||||||||||| ||| |||||||||||||||||  ||||||| |||||||| ||||||||    
T  7204154 cccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatcatc 7204242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 138 - 226
Target Start/End: Original strand, 7238905 - 7238993
Alignment:
Q  138 cccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaatcatc 226  Q
    ||||||||||| |  ||||||||||||||||||||||||| ||| |||||||||||||||||  ||||||| |||||||| ||||||||    
T  7238905 cccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaatacattcatccctacctcattaaatcatc 7238993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 325 - 431
Target Start/End: Original strand, 6472284 - 6472390
Alignment:
Q  325 aaacatccaatgaaaaacatgtagtatcttcttttagtgatctcggtgtcaccttagatatcccttcttcaaatctcaccttcttccttgtaagaggaag 424  Q
    |||| ||||||||||||||  |||| ||||| | |||||||||| |||||||||| || || |||||| ||||| | |  ||||||||||| ||||||||    
T  6472284 aaacttccaatgaaaaacacatagtctcttcctatagtgatctcagtgtcaccttggacatgccttctacaaatatgagtttcttccttgttagaggaag 6472383  T
Q  425 tcccttt 431  Q
    |||||||    
T  6472384 tcccttt 6472390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 141 - 223
Target Start/End: Complemental strand, 6458506 - 6458424
Alignment:
Q  141 ctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaatc 223  Q
    ||||| |||||||||||||||||||| ||||||||  | || ||||||  |||||| ||  |||| |||||||||||||||||    
T  6458506 ctcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacacctgagtacattcacccttacctcatcaaatc 6458424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 75; Significance: 2e-34; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 9664312 - 9664466
Alignment:
Q  105 tccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttc 204  Q
    ||||| |||||||||  |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| || |||||||||  ||||||  |||    
T  9664312 tccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattc 9664411  T
Q  205 atccttacctcatcaaatcatcagactcatcactttctgtttcatatccatctat 259  Q
    | ||||| ||| ||||||| ||  |||||||||||||| |||| |||||||||||    
T  9664412 acccttatctcgtcaaatcgtcgaactcatcactttctctttcgtatccatctat 9664466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 94 - 223
Target Start/End: Original strand, 3752829 - 3752958
Alignment:
Q  94 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 193  Q
    ||||| |||| || || ||||||||  |||| || ||||| | ||||||||| |||||||||||||||||||||||||||||| |||| ||||||  |||    
T  3752829 tcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttcttccaaaactttgttctccacaatggtgacacacc 3752928  T
Q  194 tgaatattttcatccttacctcatcaaatc 223  Q
    ||||||  |||| |||||||||||||||||    
T  3752929 tgaatacattcacccttacctcatcaaatc 3752958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 141 - 250
Target Start/End: Complemental strand, 4047362 - 4047253
Alignment:
Q  141 ctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttcatccttacctcatcaaatcatcagactcatcacttt 240  Q
    ||||| |||||||| ||||||||||| ||||||||  | || ||||| |||| ||||||  |||| ||||||||  ||||||| ||| |||| || || |    
T  4047362 ctccctacaaactcattcttccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttaccttgtcaaatcctcaaactcttccctat 4047263  T
Q  241 ctgtttcata 250  Q
    ||||||||||    
T  4047262 ctgtttcata 4047253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 105 - 259
Target Start/End: Original strand, 13535336 - 13535490
Alignment:
Q  105 tccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacctgaatattttc 204  Q
    ||||| |||||||||  |||||| ||||||| ||||||||| |||||||||||||||||||||||||||||||| || |||||||||  ||||||  |||    
T  13535336 tccaatttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattc 13535435  T
Q  205 atccttacctcatcaaatcatcagactcatcactttctgtttcatatccatctat 259  Q
    | ||||| ||| ||||||| ||  |||||||||||||| |||| |||||||||||    
T  13535436 acccttatctcgtcaaatcgtcgaactcatcactttctctttcgtatccatctat 13535490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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