View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0819_low_43 (Length: 206)
Name: NF0819_low_43
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_low_43 |
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Alignment Details
Target: chr8 (Bit Score: 151; Significance: 4e-80; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 4e-80
Query Start/End: Original strand, 1 - 159
Target Start/End: Complemental strand, 41126932 - 41126774
Alignment:
| Q |
1 |
cgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattcc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
41126932 |
cgtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcctcgggcaactccaattcc |
41126833 |
T |
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| Q |
101 |
aaaagagtatctgcataggaaacaacattgtttttgctcaatctcctttcctttgcttc |
159 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
41126832 |
aaaagagtatctgcataggaaacaacattgtttttgctcaatctcctttccttggcttc |
41126774 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 111
Target Start/End: Complemental strand, 2350910 - 2350819
Alignment:
| Q |
20 |
ccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattccaaaagagtatc |
111 |
Q |
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| T |
2350910 |
ccagcattcaaaaactctgaacaaagactaaccatttcatcttcactcaatttccgtttctcatcaggcaactccaactccaaaagagtatc |
2350819 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 2310070 - 2309945
Alignment:
| Q |
2 |
gtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattcca |
101 |
Q |
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| T |
2310070 |
gtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggctactctaactcta |
2309971 |
T |
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| Q |
102 |
aaagagtatctgcataggaaacaaca |
127 |
Q |
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| T |
2309970 |
aaagagtatctgcatatgaaacaaca |
2309945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 2321029 - 2320929
Alignment:
| Q |
26 |
ttcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattccaaaagagtatctgcataggaaacaa |
125 |
Q |
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| T |
2321029 |
ttcaaaaactccgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaactccaactctaaaagagtatctgcatacgaaacaa |
2320930 |
T |
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| Q |
126 |
c |
126 |
Q |
| |
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| |
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| T |
2320929 |
c |
2320929 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 24 - 127
Target Start/End: Complemental strand, 2303330 - 2303227
Alignment:
| Q |
24 |
cattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattccaaaagagtatctgcataggaaac |
123 |
Q |
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|||||| ||||||||||||||| | |||||||||| ||||||| ||| |||||||| |||||||||||||| || | ||||||||||||||| ||||| |
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| T |
2303330 |
cattcagaaactctgaacaaagattaaccatttcattctcactcaactttcgtttctcctcgggcaactccaactctagaagagtatctgcatacgaaac |
2303231 |
T |
|
| Q |
124 |
aaca |
127 |
Q |
| |
|
|||| |
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|
| T |
2303230 |
aaca |
2303227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 2 - 127
Target Start/End: Complemental strand, 2293739 - 2293614
Alignment:
| Q |
2 |
gtggaggtcgtgtctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattcca |
101 |
Q |
| |
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||||| || |||||||| ||| | |||||||||||||||||||| | |||||||||| ||||||||||| |||||||| || ||| |||| || || | |
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| T |
2293739 |
gtggaagtagtgtctgtcccaccgttcaaaaactctgaacaaagattaaccatttcattctcactcagcttccgtttctcctcaggccactctaactcta |
2293640 |
T |
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| Q |
102 |
aaagagtatctgcataggaaacaaca |
127 |
Q |
| |
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| |||||||||||||| ||||||||| |
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| T |
2293639 |
agagagtatctgcatatgaaacaaca |
2293614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 17 - 127
Target Start/End: Complemental strand, 2330607 - 2330497
Alignment:
| Q |
17 |
gtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattccaaaagagtatctgcat |
116 |
Q |
| |
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|||||| | ||||||||||| |||||||| || | ||||||||| ||||||| || |||||||| | ||||||||||| |||| |||||||||| ||| |
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| T |
2330607 |
gtgccaccgttcaaaaactccgaacaaagactaatcatttcatcctcactcaatttccgtttctcctgaggcaactccaactccataagagtatctacat |
2330508 |
T |
|
| Q |
117 |
aggaaacaaca |
127 |
Q |
| |
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| ||||||||| |
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| T |
2330507 |
acgaaacaaca |
2330497 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 14 - 127
Target Start/End: Complemental strand, 2326895 - 2326782
Alignment:
| Q |
14 |
tctgtgccagcattcaaaaactctgaacaaaggctgaccatttcatcttcactcagcttgcgtttctcatcgggcaactccaattccaaaagagtatctg |
113 |
Q |
| |
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||||| ||||||||||||||||| |||||||| || ||||||||||| ||| ||| ||| ||||| || ||||||||||| |||||||| ||||| |
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| T |
2326895 |
tctgtaccagcattcaaaaactccgaacaaagactaaccatttcatcctcagtcaacttccgtttttccattggcaactccaactccaaaagtgtatcca |
2326796 |
T |
|
| Q |
114 |
cataggaaacaaca |
127 |
Q |
| |
|
| |||||||||||| |
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|
| T |
2326795 |
cgtaggaaacaaca |
2326782 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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