View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0819_low_8 (Length: 420)
Name: NF0819_low_8
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 55 - 391
Target Start/End: Complemental strand, 3162063 - 3161727
Alignment:
| Q |
55 |
gtttgaaattgggaaaactcaaactctaccaaaacggagaaagtccatcaaatcaggatgggttcgagcggatatccgcaagtacgggttttgtttcatg |
154 |
Q |
| |
|
||||||||| ||||||| ||||||||||||||||||| |||||||| ||||||| |||||| || ||||||||||||||||||||| ||||||||||||| |
|
|
| T |
3162063 |
gtttgaaatcgggaaaattcaaactctaccaaaacggggaaagtccgtcaaatcgggatggatttgagcggatatccgcaagtacgagttttgtttcatg |
3161964 |
T |
|
| Q |
155 |
cctgttcaagaactggcattaatgaactaaggaaatatcatgaactacaccttaattactagaataacaaaattggataaaaatatatcgtcacaactca |
254 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
3161963 |
cctgttcaagaactggcattaatgaactaaggaaatatcatgaactacaccttaattactagaataacaaaattggataaaaatatattgtcacaactca |
3161864 |
T |
|
| Q |
255 |
cagtatgttttagcatacattataaagttaaaatcctaatttaatgaaatttttaattagtaggtaacaaagccaatattagaaagatcaaatgaattcc |
354 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3161863 |
cagtatgttttagcatacattataaagttaaaatcctaatttaatgaaatttttaattagtaggtaacaaagccaatattagaaagatcaaatgaattcc |
3161764 |
T |
|
| Q |
355 |
acagcgagagatctccatcaatattggatgatataga |
391 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| |
|
|
| T |
3161763 |
acagtgagagatctccatcaatattggatgatataga |
3161727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4676 times since January 2019
Visitors: 5751