View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0819_low_9 (Length: 418)
Name: NF0819_low_9
Description: NF0819
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0819_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 1 - 402
Target Start/End: Original strand, 28752803 - 28753204
Alignment:
| Q |
1 |
tgcaaagcaccattggtgttggtgttgacatagaatctgtgccagcagcttctatagaggtttccgcttcagtctcaccaccatgctcttgttctaaaga |
100 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |
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| T |
28752803 |
tgcaaagcaccattggtgttggtgttgacatagaagctgtagcagcagcttctatagaggttaccacttcagtctcaccaccatgctcttgttctaaaga |
28752902 |
T |
|
| Q |
101 |
caatcccagctccaggaaaacagaatcgttgcagccggtgaattttttaaattcagcaaagaaatatatcatgtcacttgagcaactttctcctgcagga |
200 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28752903 |
taatcccagctccagaaaaacagaatcgttgcagccggtgaattttttaaattcagcaaagaaatatatcatgtcacttgagcaactttctcctgcagga |
28753002 |
T |
|
| Q |
201 |
tctgtggcaactaagcaaatctgagactgcatctcaccaatcgatacattctgtaattgggcaaggtttccagtttggcaattattgagacaaccatcag |
300 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28753003 |
tctgtggcagctaagcaaatctgagactgcatctcaccaatcgatacattctgtaattgggcaaggtttccagtttggcaattattgagacaaccatcag |
28753102 |
T |
|
| Q |
301 |
aagtattgtaaggtaccttccgttttctaccacgccgtgaagttgaattattagcagcaatttgggaattattgaaacaaccattagaagtattgtaagc |
400 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28753103 |
aagtattgtaaggtaccttccgtttcctaccacgccgtgaagttgaattattagcagcaatttgggaattattgaaacaaccattagaagtattgtaagc |
28753202 |
T |
|
| Q |
401 |
tg |
402 |
Q |
| |
|
|| |
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|
| T |
28753203 |
tg |
28753204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 274 - 408
Target Start/End: Original strand, 28753163 - 28753297
Alignment:
| Q |
274 |
tttggcaattattgagacaaccatcagaagtattgtaaggtaccttccgttttctaccacgccgtgaagttgaattattagcagcaatttgggaattatt |
373 |
Q |
| |
|
||||| ||||||||| |||||||| |||||||||||||| | |||| |||| || ||||||||||||||||||||||||||||||||||||||||| || |
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|
| T |
28753163 |
tttgggaattattgaaacaaccattagaagtattgtaagctgtcttcagtttcctgccacgccgtgaagttgaattattagcagcaatttgggaattgtt |
28753262 |
T |
|
| Q |
374 |
gaaacaaccattagaagtattgtaagctgcctttg |
408 |
Q |
| |
|
||||||| |||||| |||||| ||||||||||||| |
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|
| T |
28753263 |
gaaacaatcattaggagtattataagctgcctttg |
28753297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 1 - 406
Target Start/End: Complemental strand, 44865950 - 44865545
Alignment:
| Q |
1 |
tgcaaagcaccattggtgttggtgttgacatagaatctgtgccagcagcttctatagaggtttccgcttcagtctcaccaccatgctcttgttctaaaga |
100 |
Q |
| |
|
|||||||| |||||||||| ||||||||||||||| ||| |||||||||||||||||||| | || ||||||||||||||||||||||||||||||| |
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|
| T |
44865950 |
tgcaaagctccattggtgtcggtgttgacatagaagatgtagcagcagcttctatagaggttactactccagtctcaccaccatgctcttgttctaaaga |
44865851 |
T |
|
| Q |
101 |
caatcccagctccaggaaaacagaatcgttgcagccggtgaattttttaaattcagcaaagaaatatatcatgtcacttgagcaactttctcctgcagga |
200 |
Q |
| |
|
|||||| |||| || |||||||||||||| | |||||| || |||| |||||| | |||||| |||||||||||||| ||| ||||||||||||||||| |
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|
| T |
44865850 |
caatccatgctctagaaaaacagaatcgttacggccggtaaacttttcaaattctgaaaagaagtatatcatgtcactggagaaactttctcctgcagga |
44865751 |
T |
|
| Q |
201 |
tctgtggcaactaagcaaatctgagactgcatctcaccaatcgatacattctgtaattgggcaaggtttccagtttggcaattattgagacaaccatcag |
300 |
Q |
| |
|
|| ||||| ||||||| | ||||||||||||||| | | ||||||||||||||| ||| |||||||||||||| |||||||| |||| ||||| |
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|
| T |
44865750 |
tccttggcagctaagcatagttgagactgcatctcatctaccgatacattctgtaactggatgtggtttccagtttggtaattattggaacaatcatcaa |
44865651 |
T |
|
| Q |
301 |
aagtattgtaaggtaccttccgttttctaccacgccgtgaagttgaattattagcagcaatttgggaattattgaaacaaccattagaagtattgtaagc |
400 |
Q |
| |
|
||| |||||||| || ||| ||||| || || |||||||||||||| |||||| ||| ||||||| || ||| |||| | | | |||||||| ||||| |
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| T |
44865650 |
aagcattgtaagctagctttcgtttccttcctcgccgtgaagttgagttattaccagaaatttggtaactatggaaatcatcgtcagaagtatcataagc |
44865551 |
T |
|
| Q |
401 |
tgcctt |
406 |
Q |
| |
|
|||||| |
|
|
| T |
44865550 |
tgcctt |
44865545 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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