View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821-Insertion-15 (Length: 140)
Name: NF0821-Insertion-15
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821-Insertion-15 |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 125; Significance: 9e-65; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 27697916 - 27697784
Alignment:
| Q |
8 |
atggttattggtcttgatgcaaaatcagcatcatgttttctcaagaattcgcgagcaatagaaggacaagtaacagggataacattgacatttcctagac |
107 |
Q |
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| T |
27697916 |
atggttattggtcttgatgcaaaatcagcatcatgttttctcaagaattcgcgggcaatggaaggacaagtaacagggataacattgacatttcctagac |
27697817 |
T |
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| Q |
108 |
gaatacatgctatttcagtgttcaattcttcca |
140 |
Q |
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| T |
27697816 |
gaatacatgctatttcagtgttcaattcttcca |
27697784 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 77; E-Value: 4e-36
Query Start/End: Original strand, 8 - 140
Target Start/End: Complemental strand, 26408905 - 26408773
Alignment:
| Q |
8 |
atggttattggtcttgatgcaaaatcagcatcatgttttctcaagaattcgcgagcaatagaaggacaagtaacagggataacattgacatttcctagac |
107 |
Q |
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| T |
26408905 |
atggttgttggtcttgatgcaaaatcagcatcatgttttctcaagatttcacgagcaatggtaggacatgttaccggaataatatggacatttcctagac |
26408806 |
T |
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| Q |
108 |
gaatacatgctatttcagtgttcaattcttcca |
140 |
Q |
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| T |
26408805 |
ggatacatgctatttcggtgttcaaatcttcca |
26408773 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 27747034 - 27747166
Alignment:
| Q |
8 |
atggttattggtcttgatgcaaaatcagcatcatgttttctcaagaattcgcgagcaatagaaggacaagtaacagggataacattgacatttcctagac |
107 |
Q |
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| T |
27747034 |
atggatattggtcttgatgcaaaagtagcatcattctttctcaagaattcaagggcaatggtgggacaggtaacaggaataacatggacatttcctaggc |
27747133 |
T |
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| Q |
108 |
gaatacatgctatttcagtgttcaattcttcca |
140 |
Q |
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| T |
27747134 |
ggatacacgctacttcagtgttcaattcttcca |
27747166 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 2e-22
Query Start/End: Original strand, 16 - 129
Target Start/End: Original strand, 27714205 - 27714318
Alignment:
| Q |
16 |
tggtcttgatgcaaaatcagcatcatgttttctcaagaattcgcgagcaatagaaggacaagtaacagggataacattgacatttcctagacgaatacat |
115 |
Q |
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| T |
27714205 |
tggtcttgatgcaaaatcaatgtcatgttttctcaagaattcatgggcaattgtgggataagtaacggggataacatggacatttcctaggcggatacat |
27714304 |
T |
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| Q |
116 |
gctatttcagtgtt |
129 |
Q |
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| T |
27714305 |
gctatttctgtgtt |
27714318 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 53; E-Value: 8e-22
Query Start/End: Original strand, 8 - 140
Target Start/End: Original strand, 27727434 - 27727566
Alignment:
| Q |
8 |
atggttattggtcttgatgcaaaatcagcatcatgttttctcaagaattcgcgagcaatagaaggacaagtaacagggataacattgacatttcctagac |
107 |
Q |
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|||| ||||||| ||||||||||| |||||||| |||||||||||||| | ||||| | ||||| |||||||| ||||||| |||||||||||| | |
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| T |
27727434 |
atggatattggttttgatgcaaaagtagcatcattctttctcaagaattcaagggcaatggtgggacaggtaacaggaataacatggacatttcctaggc |
27727533 |
T |
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| Q |
108 |
gaatacatgctatttcagtgttcaattcttcca |
140 |
Q |
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| T |
27727534 |
ggatacacgctatttcggtgttcatttcttcca |
27727566 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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