View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821-Insertion-3 (Length: 872)
Name: NF0821-Insertion-3
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821-Insertion-3 |
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| [»] chr6 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 385 - 872
Target Start/End: Original strand, 2310556 - 2311053
Alignment:
| Q |
385 |
aaactaataatttattattttattttaatgtttaagggaaataacaatggtgctattaaggcagcaggcaaggccgttcaagctaaccttggttagagct |
484 |
Q |
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| T |
2310556 |
aaactaataatttattattttattttaatgtttaagggatgtaacattggtgctattaagacagcacagaaggccgttaaatctgcccttggttagagct |
2310655 |
T |
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| Q |
485 |
cttttgacttttctcatttctctcttttcaattacttgcgatcaatgtttatttatttgaaaatttaaaccaccaagaagtagctttgcatatacgtttt |
584 |
Q |
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| T |
2310656 |
attttgacttttctcatttctctcttttcaattacttgcgatcaatgtttatttatttgaaaatttaaaccaccaagaagtagctttgcatatacgtttt |
2310755 |
T |
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| Q |
585 |
tgcatatctgtaattggcaggcgaacatagaatagaagttttataaattttatcttacttttgcagttggcgaggatgaagagaagctgtgatctgaagc |
684 |
Q |
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| T |
2310756 |
tgcatatctgtaattgccagggggacatagaatagaagttttataaattttatcttacttttgcagatgaggagggtgaagagaagctgtgatctgaagc |
2310855 |
T |
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| Q |
685 |
tgtttgc----------ttgcatttcatattttatcatttttggaattctgttttattaattttgaatttaactacctagcagatgccccacatatgttg |
774 |
Q |
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| T |
2310856 |
tggttgctactaccatgttgcatttcatattttatcatttttgaaattctgttttattaa-tttgaatttaactacctagcagatgccccacatttgttg |
2310954 |
T |
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| Q |
775 |
gggaataaaaaacaccttgatgttgtgtgaccatctatttgaatctgtttgcttaataatttgatttac-tttttcggttcaacaatatctatctacag |
872 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||| | ||||||| |
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| T |
2310955 |
gggaataaaaaacaccttgatgttgtgtgaccatctatttgaatctatttgcttgataatttgatttacttttttcggttcaacaatatttgtctacag |
2311053 |
T |
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