View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0821-Insertion-4 (Length: 643)
Name: NF0821-Insertion-4
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821-Insertion-4 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 128; Significance: 8e-66; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 128; E-Value: 8e-66
Query Start/End: Original strand, 76 - 228
Target Start/End: Complemental strand, 37164675 - 37164527
Alignment:
| Q |
76 |
ataacctgtgtttatgcagaatctagctatttaagttatcacgacctcacttcaaaatacatattatctctaattgacttctgaatacatatcatcttta |
175 |
Q |
| |
|
|||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37164675 |
ataacccgtgtttatgcagaatctagctattt----tatcacgacctcacttcaaaatacatattatctctaattgacttctgaatacatatcatcttta |
37164580 |
T |
|
| Q |
176 |
attgttttacatgttttttaaatttactgggcttcgaacccttatatgtagct |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37164579 |
gttgttttacatgttttttaaatttactgggcttcgaacccttatatgtagct |
37164527 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 120; E-Value: 4e-61
Query Start/End: Original strand, 508 - 643
Target Start/End: Complemental strand, 37162687 - 37162552
Alignment:
| Q |
508 |
ctcgcgatgtaaagcaatgctgtatttttatatggcattattaacttccgactgggcatacaagagtggagtaatgttgcaaaatagtggattttgattg |
607 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37162687 |
ctcgcgatgtatagcaatgctgtatttttatatggcattattaacttctgactgcccatacaagagtggagtaatgttgcaaaatagtggattttgattg |
37162588 |
T |
|
| Q |
608 |
gatattagtgtaaaactgttttcttctgacggtgta |
643 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37162587 |
gatattagtgtaaaactgttttcttctgacggtgta |
37162552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 479 - 514
Target Start/End: Complemental strand, 37162730 - 37162695
Alignment:
| Q |
479 |
atcaaaggctttttgctgtcgggataacactcgcga |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |
|
|
| T |
37162730 |
atcaaaggctttttgctgtcgggataacactcgcga |
37162695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 47 - 79
Target Start/End: Complemental strand, 37164739 - 37164707
Alignment:
| Q |
47 |
taagcatgtgttaatcttttcaaatacatataa |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
37164739 |
taagcatgtgttaatcttttcaaatacatataa |
37164707 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 447
Target Start/End: Complemental strand, 37162793 - 37162748
Alignment:
| Q |
399 |
accagtgctgtattgtgtggtaaaccgcctgaaagctatgtggggcctt |
447 |
Q |
| |
|
||||||||||||||||| |||| ||||||||||||||||||||||||| |
|
|
| T |
37162793 |
accagtgctgtattgtg--gtaa-ccgcctgaaagctatgtggggcctt |
37162748 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 564 - 625
Target Start/End: Complemental strand, 596508 - 596447
Alignment:
| Q |
564 |
catacaagagtggagtaatgttgcaaaatagtggattttgattggatattagtgtaaaactg |
625 |
Q |
| |
|
||||||||||||| || |||| |||||||||| ||||||||||| || |||||||||||||| |
|
|
| T |
596508 |
catacaagagtggggttatgtggcaaaatagttgattttgattgaatgttagtgtaaaactg |
596447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 572 - 623
Target Start/End: Original strand, 49250276 - 49250327
Alignment:
| Q |
572 |
agtggagtaatgttgcaaaatagtggattttgattggatattagtgtaaaac |
623 |
Q |
| |
|
||||| || |||||||||||||||||||||| ||||||| ||| |||||||| |
|
|
| T |
49250276 |
agtggggtgatgttgcaaaatagtggattttcattggatgttaatgtaaaac |
49250327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 581 - 630
Target Start/End: Complemental strand, 17511398 - 17511349
Alignment:
| Q |
581 |
atgttgcaaaatagtggattttgattggatattagtgtaaaactgttttc |
630 |
Q |
| |
|
|||| ||||| ||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
17511398 |
atgtggcaaagtagtggattttcattggatgtcagtgtaaaactgttttc |
17511349 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 4560 times since January 2019
Visitors: 5751