View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821-Insertion-5 (Length: 546)
Name: NF0821-Insertion-5
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821-Insertion-5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 488; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 7 - 546
Target Start/End: Complemental strand, 28081653 - 28081114
Alignment:
| Q |
7 |
agaaagaagagacaaaagctgttcttgtgtgtaaaatctacttcccatgttaacagaagcttgttgaatcatcaaatcattcacaacagacacactggca |
106 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
28081653 |
agaaagaagagacaaaagctgttcttgtgtgtaaaatctacttcccatgttaacagaagcttgttgaatcatcaaatcattcacaacagacacactagca |
28081554 |
T |
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| Q |
107 |
tgattcacatcaaggtctaattctttcaacgccgccatcaacttcgccgcagggtgattcttcttgctacattgaatcctaatcatagcatcccaaccca |
206 |
Q |
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| T |
28081553 |
tgattcacatcaaggtctaattctttcaacgccgccatcaacttcgccgcagggtgattcttcttgctgcattgaatcctaatcatagcatcccaaccca |
28081454 |
T |
|
| Q |
207 |
taatcttcacatcaatatccaagtcaattaacttagaagggcttgttgagctcgttgttttctccatttctttatctaatggaattggattttgactttg |
306 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
28081453 |
taatcttcacatcaatatccaagtcaattaacttagaagagcttgttgagcttgttgttttctccttttctttatctaatggaattggattttgactttg |
28081354 |
T |
|
| Q |
307 |
atttttgcttgcaacaagttctaattccttctttgttgcacctaattgtatctccaattcgcctttcgacgattccagcccttgtagcttcgatttcaat |
406 |
Q |
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| T |
28081353 |
atttttgcttgcaacaagttctaattccttctttgttgcacctaattgtttctccaattcaccttttgacgattccagcccttgtagcttcgatttcaat |
28081254 |
T |
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| Q |
407 |
tcatttatataagaaatagcatcgcctaggagcgatgctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagct |
506 |
Q |
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| T |
28081253 |
tcgtttatataagatatagcatcgcctagcagcgatgctttgtccatcttagaaacatttggaaccacagcacgtagagcatagaatttttggttaagct |
28081154 |
T |
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| Q |
507 |
tttctcttctttgtctctctgcttctacatgattcaatgg |
546 |
Q |
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| T |
28081153 |
tttctcttctttgtctctctgcttctacatgattcaatgg |
28081114 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 443 - 542
Target Start/End: Complemental strand, 9194878 - 9194779
Alignment:
| Q |
443 |
gctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgtctctctgcttctacatgattca |
542 |
Q |
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| T |
9194878 |
gctttatccatctttgaaacgtttggaaccacagatcttaaagcatagaatctatggtttagtttctctctcctttgtctctctgcttccacatggttca |
9194779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 443 - 542
Target Start/End: Original strand, 9213152 - 9213251
Alignment:
| Q |
443 |
gctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgtctctctgcttctacatgattca |
542 |
Q |
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| T |
9213152 |
gctttatccatctttgaaacatttggaaccacagatcttaaagcgtaaaatctatggtttagtttctctctcctttgtctctctgcttccacatggttca |
9213251 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 9e-19; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 9e-19
Query Start/End: Original strand, 65 - 225
Target Start/End: Complemental strand, 12886381 - 12886221
Alignment:
| Q |
65 |
gcttgttgaatcatcaaatcattcacaacagacacactggcatgattcacatcaaggtctaattctttcaacgccgccatcaacttcgccgcagggtgat |
164 |
Q |
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|||||||| |||||||||||||| || ||||||||||||||||| | ||| || ||||| | || | ||||| ||||| ||| |||| |||||||| | |
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| T |
12886381 |
gcttgttgtatcatcaaatcatttaccacagacacactggcatggtgcacttctaggtcaagctccattaacgctgccattaacctcgctgcagggtggt |
12886282 |
T |
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| Q |
165 |
tcttcttgctacattgaatcctaatcatagcatcccaacccataatcttcacatcaatatc |
225 |
Q |
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| T |
12886281 |
ttttcttactgcattggacccttatcattgcatcccaacctataatcttcacgtcgatatc |
12886221 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 443 - 543
Target Start/End: Complemental strand, 12886003 - 12885903
Alignment:
| Q |
443 |
gctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgtctctctgcttctacatgattca |
542 |
Q |
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||||||||||| || |||||||| ||||| || || || || ||||||||| |||| || ||||| ||||||||||| ||||| ||||| |||||||||| |
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| T |
12886003 |
gctttgtccatctttgaaacattaggaacaaccgctcgaagtgcatagaatctctgattcagcttctctcttctttgcctctcagcttcaacatgattca |
12885904 |
T |
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| Q |
543 |
a |
543 |
Q |
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| T |
12885903 |
a |
12885903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 421 - 542
Target Start/End: Complemental strand, 38660705 - 38660584
Alignment:
| Q |
421 |
aatagcatcgcctaggagcgatgctttgtccattttagaaacatttggaaccacagcacgtagagcatagaatttctggttaagcttttctcttctttgt |
520 |
Q |
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|||||||||||| || || || || |||||||||||||||| || ||||| ||||| | || || || ||| ||||||||||||| || | |||||| |
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| T |
38660705 |
aatagcatcgccaagaagagaagccttgtccattttagaaatgttaggaacaacagctcttaaggcgtaaaatctctggttaagcttctcccgtctttgc |
38660606 |
T |
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| Q |
521 |
ctctctgcttctacatgattca |
542 |
Q |
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| T |
38660605 |
ctctccgcttcaacatgattca |
38660584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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