View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821-Insertion-6 (Length: 498)
Name: NF0821-Insertion-6
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821-Insertion-6 |
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| [»] chr2 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 409; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 6 - 498
Target Start/End: Complemental strand, 13033166 - 13032666
Alignment:
| Q |
6 |
cattaatgtaattttggttgattttatttaagaatgtaaggtttgttgtaagacactaatacaaagannnnnnn-------ggtataatttaacttgatt |
98 |
Q |
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| T |
13033166 |
cattaatgtaattttggttgattttatttaagaatgtaaggtttgttgtaagacactaatacaaaaaaaaaaaaaaaaattggtataatttaacttgatt |
13033067 |
T |
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| Q |
99 |
tgttggttattttgactaaatttgatcagttgttataaacttaatttgtataggnnnnnnngacattaatgcaagacgttaatttaatattttttacatt |
198 |
Q |
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| T |
13033066 |
tgttggttattttgactaaatttgatcagttgttataaacttaatttgtataggtttttttgacattaatgcaagacgttaatttaatattttttacatt |
13032967 |
T |
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| Q |
199 |
gtacaaattggtcaacatgtttttgaatgatatactttatctaaaaatgtaattttgaacaatttaaaatttacattccttagatgtgtacatccaaagt |
298 |
Q |
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| T |
13032966 |
gtacaaattggtcaacatgtttttgaatgatatactttatctaaaaacataattttgaacaatttaaaatttacattccttagatgtgtacatccaaagt |
13032867 |
T |
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| Q |
299 |
aattgtggatgtgtgaaaaattcctcctttcttttattg-taaatttagaagctcgatattgatatgcatacaaaacttggtatatccctttgctcaatt |
397 |
Q |
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| T |
13032866 |
aattgtggatgtgtgaaaaattcctcccttcttttattgttaaatttagaagctcgatattgatatgcatacaaaacttggtatatccctttgctcaatt |
13032767 |
T |
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| Q |
398 |
gttttcttttctcaacaattcaaagttatcacaaagttaattcacatataaatgtttcctcacatagatcatacattttttaaatcacaattttttataa |
497 |
Q |
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| T |
13032766 |
gttttcttttctcaacaattcaaagttatcacaaagttaattcacatataaatgtttcctcacatagatcatacattttttaaatcacaattttttataa |
13032667 |
T |
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| Q |
498 |
t |
498 |
Q |
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| T |
13032666 |
t |
13032666 |
T |
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