View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821-Insertion-9 (Length: 217)

Name: NF0821-Insertion-9
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821-Insertion-9
NF0821-Insertion-9
[»] chr2 (1 HSPs)
chr2 (8-217)||(5549288-5549497)


Alignment Details
Target: chr2 (Bit Score: 156; Significance: 5e-83; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 156; E-Value: 5e-83
Query Start/End: Original strand, 8 - 217
Target Start/End: Complemental strand, 5549497 - 5549288
Alignment:
8 aaatcatccatatttcttggtaattttctgaaccttaaaaacaactgtttnnnnnnnnnnnnnntccaatgatctcattcttcagtcatcatgtcaaaat 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||              ||||||||||||||||||||||||||||||||||||    
5549497 aaatcatccatatttcttggtaattttctgaaccttaaaaacaactgtttaaaaagaaaaaaaatccaatgatctcattcttcagtcatcatgtcaaaat 5549398  T
108 ctgattggatgtgatataaaataaagtactaaaataatatatctaattttggaataactacaaaattattaaatattaagaaacccttttattaatttct 207  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||    
5549397 ctgattggatgtgatataaaataaagtactaaaataatatatctaattttggaatatctacaaaattataaaatattaagaaacccttttattaatttct 5549298  T
208 acaaatgatg 217  Q
    ||| ||||||    
5549297 acacatgatg 5549288  T

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