View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0821_high_13 (Length: 565)
Name: NF0821_high_13
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_high_13 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 6 - 497
Target Start/End: Complemental strand, 14066131 - 14065644
Alignment:
| Q |
6 |
acaattagaaataagagtttgagattgttctcactttatatagtgaaatttgttgtttcctatagacatagcctaaattgggcgaatcatcttattttga |
105 |
Q |
| |
|
|||||||||||||||||||||||||||||| || || |||||||||||||||||||||||||||||||||| | |||||||| ||| || |||||||||| |
|
|
| T |
14066131 |
acaattagaaataagagtttgagattgttcacatttcatatagtgaaatttgttgtttcctatagacatagtccaaattgggtgaaccaccttattttga |
14066032 |
T |
|
| Q |
106 |
tgtgtcttggtaagctgtgaagattaacctgataagtagcaatgataagtgattagcaacctgttagttagttatctagcagtatcagttagttatgaat |
205 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
14066031 |
tgtgtcttgataagctgtgaagattaacctgataagtagcaatgataagtgattagcaacctgttagttagttatctagcagttttagttagttatgaat |
14065932 |
T |
|
| Q |
206 |
ttcccgcatttctagcttttcagttatgacagttagtagctgatttctcatgtattaataccgcaaaacctctccttcgttcattaatgagcatcagatt |
305 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14065931 |
ttcccgcatttctagcttttcagttatgacagttagtagctgatttctcatgtattaataccgcaaaacctctccttcgttcattaatgagcatcagatt |
14065832 |
T |
|
| Q |
306 |
gctcgttcatatcacttctttgctccgaggtttattttgttaatctggtatcattggtattttgagagcttttctttgctgcactctcatcatcatgcct |
405 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
14065831 |
gctcattcatatcacttctttgctccgaggtttattttgttaatctggtatcattggtattttgagagcttttctttgctgcactctca---tcatgcct |
14065735 |
T |
|
| Q |
406 |
cgaaattcttaactttattccaccatactcattaatgggaatgttgtttccgatccaacgcacaatccacttttccttcatccaagcgaaag |
497 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||| |
|
|
| T |
14065734 |
cgaaattcttaactttattccaccatactcattaatgggaatgttgtttccgatccaacg-acaatccatttttccttcatccaagcgaaag |
14065644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 502 - 560
Target Start/End: Original strand, 51805610 - 51805668
Alignment:
| Q |
502 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
560 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51805610 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
51805668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 502 - 560
Target Start/End: Complemental strand, 20017454 - 20017396
Alignment:
| Q |
502 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
560 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||| |
|
|
| T |
20017454 |
agctgttgcaagtttttcaacaatccaagctctgaaggaatttgacttgcgaggaaatt |
20017396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7075 times since January 2019
Visitors: 5774