View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_high_16 (Length: 556)
Name: NF0821_high_16
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 386; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 28754692 - 28755077
Alignment:
| Q |
1 |
gactctgcacctccatcagaacattgaatcacacttttctcatcatcattcttcaccaacccacatgaaaattttcctcctttcccatcacaccctccat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28754692 |
gactctgcacctccatcagaacattgaatcacacttttctcatcatcattcttcaccaacccacatgaaaattttcctcctttcccatcacaccctccat |
28754791 |
T |
|
| Q |
101 |
caacaacatcaaacattccgccatcctcaaaaccattaactttttcatcacaaaaaccctcttttccacaccctgaatccttatgaaacccaaccacatt |
200 |
Q |
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| T |
28754792 |
caacaacatcaaacattccgccatcctcaaaaccattaactttttcatcacaaaaaccctcttttccacaccctgaatccttatgaaacccaaccacatt |
28754891 |
T |
|
| Q |
201 |
agtcccagaaagcatgtcaacaaaaccatcattgtttcctccaacatcactaattagggtttcatcaaaagaaacaccaacaccaacattagaccttaaa |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
28754892 |
agtcccagaaagcatgtcaacaaaaccatcattgtttcctccaacatcactaattagggtttcatcaaaagaaacaccaacaccaacattagaccttaaa |
28754991 |
T |
|
| Q |
301 |
gatttaaatcccaaaacatccttctctcgatcaaataaaacagtatcggcattcaaatcaatttgttctgaattcatagccattgt |
386 |
Q |
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| T |
28754992 |
gatttaaatcccaaaacatccttctctcgatcaaataaaacagtatcggcattcaaatcaatttgttctgaattcatagccattgt |
28755077 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 418 - 464
Target Start/End: Original strand, 28755109 - 28755155
Alignment:
| Q |
418 |
cgtgcatggattcatattacaattctaataatgtaaattgtaaaaat |
464 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
28755109 |
cgtgcatggattcatattacaattctaacaatgtaaattgtaaaaat |
28755155 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 65; Significance: 3e-28; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 6 - 86
Target Start/End: Complemental strand, 44864158 - 44864078
Alignment:
| Q |
6 |
tgcacctccatcagaacattgaatcacacttttctcatcatcattcttcaccaacccacatgaaaattttcctcctttccc |
86 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||||||||||||| ||||||| |
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| T |
44864158 |
tgcacctccatcagaacattgaatcacacttttctcctcttcatttttcaccaacccacatgaaaattttcctactttccc |
44864078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 27 - 118
Target Start/End: Original strand, 45248353 - 45248444
Alignment:
| Q |
27 |
aatcacacttttctcatcatcattcttcaccaacccacatgaaaattttcctcctttcccatcacaccctccatcaacaacatcaaacattc |
118 |
Q |
| |
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|||||||||||||||||| ||| |||||| |||||||||||||||||| ||| |||||||| |||||||||||||| |||||||||||||| |
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| T |
45248353 |
aatcacacttttctcatcttcaatcttcatcaacccacatgaaaatttccctactttcccaccacaccctccatcataaacatcaaacattc |
45248444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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