View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0821_high_20 (Length: 449)
Name: NF0821_high_20
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_high_20 |
 | |
|
| [»] scaffold0117 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 38274533 - 38274843
Alignment:
| Q |
1 |
aatcatcaaacctaccaagcactaatacaacactggacgcgatacgtggacaccaataataatgtnnnnnnnnnnnnntgtaaccgcatactatcgctat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| ||||||| ||||||| |||||||||||||| |
|
|
| T |
38274533 |
aatcatcaaacctaccaagcactgatacaacactggacacgatacgtggacaccaattataatgtaaaaaaataaaaatgtaaccacatactatcgctat |
38274632 |
T |
|
| Q |
101 |
gctaataaaagactcgagacacatcttcaatttgaagtgtccgtgctacatagcgtcaaatcaaataacattgcacaatcatatacacacatacctcaac |
200 |
Q |
| |
|
||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38274633 |
gctaatataagactcgagacacgtcttcaatttgaagtgtccgtgctacatagcgtcaaatcaaataacattgcacaatcatatacacacatacctcaac |
38274732 |
T |
|
| Q |
201 |
ctgtggttcgccattttgtttgaaccacgcatcttcttttccaatctcctccaatctcttcttcctcccaactttcttccttttggaagtttcaacaaaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
38274733 |
ctgtggttcgccattttgtttgaaccacgcatcttcttttccaatctcctccaacctcttcttcctcccaacttccttccttttggaagtttcaacaaaa |
38274832 |
T |
|
| Q |
301 |
tcttcaacaac |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
38274833 |
tcttcaacaac |
38274843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 377 - 441
Target Start/End: Original strand, 38274909 - 38274973
Alignment:
| Q |
377 |
aacctctaacagaaccattgctaccattgacaacccttccatttccgctccatttcacatcgctc |
441 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
38274909 |
aacctctaacagaaccattgctaccattgacaacagttccatttccgctccatttcacatcgctc |
38274973 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 215 - 266
Target Start/End: Original strand, 43239915 - 43239966
Alignment:
| Q |
215 |
tttgtttgaaccacgcatcttcttttccaatctcctccaatctcttcttcct |
266 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||||||||||| ||||||| |
|
|
| T |
43239915 |
tttgtttaaaccacgcgtcttctttaccaatctcctccaatcttctcttcct |
43239966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0117 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0117
Description:
Target: scaffold0117; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 150
Target Start/End: Original strand, 30429 - 30461
Alignment:
| Q |
118 |
gacacatcttcaatttgaagtgtccgtgctaca |
150 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| |
|
|
| T |
30429 |
gacacaacttcaatttgaagtgtccgtgctaca |
30461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 7073 times since January 2019
Visitors: 5773