View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_high_21 (Length: 445)
Name: NF0821_high_21
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_high_21 |
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Alignment Details
Target: chr6 (Bit Score: 258; Significance: 1e-143; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 89 - 440
Target Start/End: Complemental strand, 16917278 - 16916930
Alignment:
| Q |
89 |
ggattttaacctattgcaaagtgcaaagctcaaaacttgaagagaactcgaagacatgttaggaatggactcaagattacgacaacatgaaatgtagagt |
188 |
Q |
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| T |
16917278 |
ggattttaagctattgcaaagtgcaaagcccaaaacttgaagagaactcgaagacatgttaggaatggactcaagattaccacaacatgaaatgtagagt |
16917179 |
T |
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| Q |
189 |
ttctgtagggaaccgagagagctaagttcaataggtagtaccttaatttgatcaaagttttcaatcataagttctgtgaggttaggcatcttaactgcaa |
288 |
Q |
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| T |
16917178 |
ttctgtagggaactgagagatctgagttcattaggtagtaccgtgatttgatgaaagccttcaatcataagttctgtgaggttaggcatcttacctgcaa |
16917079 |
T |
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| Q |
289 |
tatttctcaggaggaaagatgcaccatgagcattaaactctttagtttttcctccaacataaacttcctcaacagagggaaggcttggaagttcaaatat |
388 |
Q |
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| T |
16917078 |
tatctctc---aggaaagatgcaccatgatcattaaactcttcagtttctcctccaacataaacttccttaacagagggaaggcttggaagttcaaatat |
16916982 |
T |
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| Q |
389 |
agggatactctgaatgcttaacttagaaagttgtgatagcatctctgctcct |
440 |
Q |
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| T |
16916981 |
agggatactctgaatgcttaacttagaaagttgtgagagcatctctactcct |
16916930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 194 - 440
Target Start/End: Complemental strand, 16911978 - 16911735
Alignment:
| Q |
194 |
tagggaaccgagagagctaagttcaataggtagtaccttaatttgatcaaagttttcaatcataagttctgtgaggttaggcatcttaactgcaatattt |
293 |
Q |
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| T |
16911978 |
tagggaacggagagagctgagttcattaggtagtaccgtgagttgatgaaaggcgtcaatcataagttctttgaggttaggcatcttacctgcaatatct |
16911879 |
T |
|
| Q |
294 |
ctcaggaggaaagatgcaccatgagcattaaactctttagtttttcctccaacataaacttcctcaacagagggaaggcttggaagttcaaatataggga |
393 |
Q |
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| T |
16911878 |
ctcagga---aagatgcttcatgatcaatatcctcttcagtttctcctccaacataaacttccttaacagagggaaggcttggaagttcaaattgaggga |
16911782 |
T |
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| Q |
394 |
tactctgaatgcttaacttagaaagttgtgatagcatctctgctcct |
440 |
Q |
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| T |
16911781 |
tactctgaatgcttaacttagaaagttgtgatagcatctctactcct |
16911735 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 149 - 272
Target Start/End: Complemental strand, 16975207 - 16975084
Alignment:
| Q |
149 |
aggaatggactcaagattacgacaacatgaaatgtagagtttctgtagggaaccgagagagctaagttcaataggtagtaccttaatttgatcaaagttt |
248 |
Q |
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|||||| |||||||| |||| | ||||||| ||||| ||||| | ||||| | |||||| | |||||| |||||||||||| || || |||||||||| |
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| T |
16975207 |
aggaatagactcaagcttaccaaaacatgagatgtatagtttttccagggatctaagagagttgagttcattaggtagtacctcaagttcatcaaagttt |
16975108 |
T |
|
| Q |
249 |
tcaatcataagttctgtgaggtta |
272 |
Q |
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| T |
16975107 |
tcaatcataagttctttgaggtta |
16975084 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 156 - 262
Target Start/End: Original strand, 16836923 - 16837029
Alignment:
| Q |
156 |
gactcaagattacgacaacatgaaatgtagagtttctgtagggaaccgagagagctaagttcaataggtagtaccttaatttgatcaaagttttcaatca |
255 |
Q |
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|||||||| || ||||| ||||||| | ||||| |||||||||| ||||||| | |||||| ||||||||||||| | || |||||| |||| ||| | |
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| T |
16836923 |
gactcaagctttggacaaaatgaaattaatagtttttgtagggaactgagagagttgagttcattaggtagtaccttgagttcatcaaacttttgaatga |
16837022 |
T |
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| Q |
256 |
taagttc |
262 |
Q |
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|||||| |
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| T |
16837023 |
aaagttc |
16837029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 192 - 262
Target Start/End: Original strand, 16842070 - 16842140
Alignment:
| Q |
192 |
tgtagggaaccgagagagctaagttcaataggtagtaccttaatttgatcaaagttttcaatcataagttc |
262 |
Q |
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|||||||||| ||||||| | |||||| ||||||||||||| | || |||||| |||||||| | |||||| |
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| T |
16842070 |
tgtagggaactgagagagttgagttcattaggtagtaccttgagttcatcaaaattttcaatgaaaagttc |
16842140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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