View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_high_24 (Length: 413)

Name: NF0821_high_24
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_high_24
NF0821_high_24
[»] chr7 (4 HSPs)
chr7 (11-384)||(25854217-25854589)
chr7 (41-319)||(25871373-25871652)
chr7 (16-83)||(25871300-25871367)
chr7 (11-151)||(7220450-7220589)
[»] chr5 (4 HSPs)
chr5 (63-164)||(28034037-28034138)
chr5 (11-116)||(29794645-29794750)
chr5 (24-117)||(1517798-1517890)
chr5 (11-51)||(39162517-39162557)
[»] chr2 (1 HSPs)
chr2 (37-111)||(21375310-21375384)
[»] chr4 (1 HSPs)
chr4 (85-224)||(29171829-29171968)
[»] chr1 (1 HSPs)
chr1 (24-120)||(36496260-36496356)
[»] chr8 (1 HSPs)
chr8 (82-164)||(8247110-8247191)


Alignment Details
Target: chr7 (Bit Score: 318; Significance: 1e-179; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 11 - 384
Target Start/End: Original strand, 25854217 - 25854589
Alignment:
Q  11 cagagaacatgtgatgaatgaaaggatttagggttgaaaactgcgtatacaaagagaaaatggaaatgagaagagagaaaagggttagggttgtgcaaaa 110  Q
    ||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25854217 cagagaacatgtgatgaatgaaaggatttagggttgaaaacggcttatacaaagagaaaatggaaatgagaagagagaaaagggttagggttgtgcaaaa 25854316  T
Q  111 aacccaagttaccccttcaaagtgttcaaatcttaagggcaaaatcgtgattttatacgagttggaatcagaactggagcacacgaagcaggaacccgct 210  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  25854317 aacccaagttaccccttcaatgtgttcaaatcttaagggcaaaatcgtgattttatacgagttggaatcagaactggagcacacgaaccaggaacccgct 25854416  T
Q  211 ctcccacctggagcagtagtgaactataagtgggatttgatttgtattcacgtttgcggtttttcactaatatatgttgctcctctcggattacgaagag 310  Q
    ||||||||||||||||||||||||||||||||||||| |||| ||||||||| ||  |||||||||||||||||||||||||||||||||  ||||||||    
T  25854417 ctcccacctggagcagtagtgaactataagtgggattggattggtattcacg-ttaaggtttttcactaatatatgttgctcctctcggaccacgaagag 25854515  T
Q  311 attgactacttagccttatatacagagaaacatatacacacttttgtaaaatggtacgaaaagcacgtcaaaac 384  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||    
T  25854516 attgactacttagccttatatacagagaaacatatacatacttttgtaaaatgatacgaaaagcacgtcaaaac 25854589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 41 - 319
Target Start/End: Original strand, 25871373 - 25871652
Alignment:
Q  41 gggttgaaaactgcgtatacaaagagaaaatggaaatgagaagagagaaaagggttagggttgtgc-aaaaaacccaagttaccccttcaaagtgttcaa 139  Q
    ||||||||||| ||||| ||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| ||||||| ||| |     
T  25871373 gggttgaaaacggcgtacacaaagagagaatggaaacgagaagagagaaaagggttagggttgtgcaaaaaaacccaaattaccctttcaaagagtttag 25871472  T
Q  140 atcttaagggcaaaatcgtgattttatacgagttggaatc-agaactggagcacacgaagcaggaacccgctctcccacctggagcagtagtgaactata 238  Q
    || |||||||||||||  |||||||||||||||||||| |  |||  |||  ||||||| |||||||||||||||||||||| ||| | | |||||||||    
T  25871473 attttaagggcaaaattttgattttatacgagttggaaccgggaatcggactacacgaaccaggaacccgctctcccacctgaagcggcactgaactata 25871572  T
Q  239 agtgggatttgatttgtattcacgtttgcggtttttcactaatatatgttgctcctctcggattacgaagagattgactac 319  Q
    |||||| || ||||   ||||||| ||||| ||||||||||| ||||||  |||||| |  |  |||||||||||||||||    
T  25871573 agtgggcttggattatcattcacg-ttgcgatttttcactaacatatgtcactcctcccaaaccacgaagagattgactac 25871652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 83
Target Start/End: Original strand, 25871300 - 25871367
Alignment:
Q  16 aacatgtgatgaatgaaaggatttagggttgaaaactgcgtatacaaagagaaaatggaaatgagaag 83  Q
    |||||||||||||||||||||||| ||||||||||| ||||| ||||||||| |||||||| ||||||    
T  25871300 aacatgtgatgaatgaaaggatttcgggttgaaaacggcgtacacaaagagagaatggaaacgagaag 25871367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 11 - 151
Target Start/End: Original strand, 7220450 - 7220589
Alignment:
Q  11 cagagaacatgtgatgaatgaaaggatttagggttgaaaactgcgtatacaaagagaaaatggaaatgagaagagagaaaagggttagggttgtgcaaaa 110  Q
    ||||||| |||| |||| |||| |  |||| ||||||| || |||  |||| ||||| | |||||| ||||||||||||| ||||||||||||||| |||    
T  7220450 cagagaatatgtaatgagtgaaggagtttaaggttgaatacagcggttacagagagagagtggaaaggagaagagagaaaggggttagggttgtgcgaaa 7220549  T
Q  111 aacccaagttaccccttcaaagtgttcaaatcttaagggca 151  Q
    ||||||| ||  |||||||||  |||||||| |||||||||    
T  7220550 aacccaaatt-tcccttcaaacggttcaaattttaagggca 7220589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 63 - 164
Target Start/End: Complemental strand, 28034138 - 28034037
Alignment:
Q  63 agagaaaatggaaatgagaagagagaaaagggttagggttgtgcaa-aaaacccaagttaccccttcaaagtgttcaaatcttaagggcaaaatcgtgat 161  Q
    ||||| ||||||||| |||||||||||||||||||||||||||||| ||||||||| ||  |||||||||  |||||||| ||||||||| |||||||||    
T  28034138 agagagaatggaaataagaagagagaaaagggttagggttgtgcaaaaaaacccaaatt-tcccttcaaacagttcaaattttaagggcataatcgtgat 28034040  T
Q  162 ttt 164  Q
    |||    
T  28034039 ttt 28034037  T

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Target: chr5; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 11 - 116
Target Start/End: Original strand, 29794645 - 29794750
Alignment:
Q  11 cagagaacatgtgatgaatgaaaggatttagggttgaaaactgcgtatacaaagagaaaatggaaatgagaagagagaaaagggttagggttgtgcaaaa 110  Q
    |||||| ||||| || || |||||| ||||||||||||||| ||||||||| ||| | ||||  || ||||| ||||||||||||| |||||||| ||||    
T  29794645 cagagagcatgtaatcaacgaaagggtttagggttgaaaacggcgtatacagagaaacaatgctaaggagaacagagaaaagggtttgggttgtgaaaaa 29794744  T
Q  111 aaccca 116  Q
    ||||||    
T  29794745 aaccca 29794750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 24 - 117
Target Start/End: Original strand, 1517798 - 1517890
Alignment:
Q  24 atgaatgaaaggatttagggttgaaaactgcgtatacaaagagaaaatggaaatgagaagagagaaaagggttagggttgtgcaaaaaacccaa 117  Q
    |||||||||| | |||| | |||||||| ||| ||||| |||||  |  |||| ||||||||||||||||||||||||||||||||||||||||    
T  1517798 atgaatgaaatggtttatgtttgaaaacggcg-atacagagagaggacagaaaggagaagagagaaaagggttagggttgtgcaaaaaacccaa 1517890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 11 - 51
Target Start/End: Complemental strand, 39162557 - 39162517
Alignment:
Q  11 cagagaacatgtgatgaatgaaaggatttagggttgaaaac 51  Q
    |||||||||||| |||||||||||| |||||||||||||||    
T  39162557 cagagaacatgtaatgaatgaaagggtttagggttgaaaac 39162517  T

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Target: chr2 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 37 - 111
Target Start/End: Original strand, 21375310 - 21375384
Alignment:
Q  37 tttagggttgaaaactgcgtatacaaagagaaaatggaaatgagaagagagaaaagggttagggttgtgcaaaaa 111  Q
    ||||||||||||||| ||| ||||| ||||| |||||||| ||||||| ||||||||||||||||||||||||||    
T  21375310 tttagggttgaaaacggcggatacagagagagaatggaaaggagaagatagaaaagggttagggttgtgcaaaaa 21375384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 85 - 224
Target Start/End: Complemental strand, 29171968 - 29171829
Alignment:
Q  85 gagaaaagggttagggttgtgcaaaaaacccaagttaccccttcaaagtgttcaaatcttaagggcaaaatcgtgattttatacgagttggaatca-gaa 183  Q
    ||||||||||||||||||||||||||||||||| ||  |||||||||   ||||||| |||| |||||||| ||||||||    |||  |||  || |||    
T  29171968 gagaaaagggttagggttgtgcaaaaaacccaaatt-gcccttcaaacaattcaaattttaacggcaaaattgtgattttcctggagcgggacccaggaa 29171870  T
Q  184 ctggagcacacgaagcaggaacccgctctcccacctggagc 224  Q
    | ||||||| |||| ||||||||||||||||||||||||||    
T  29171869 caggagcacgcgaaccaggaacccgctctcccacctggagc 29171829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 120
Target Start/End: Original strand, 36496260 - 36496356
Alignment:
Q  24 atgaatgaaaggatttagggttgaaaactgcgtatacaaagagaaaatggaaatgagaagagagaaaagggttagggttgtgcaaaaaacccaagtt 120  Q
    |||||||||||| ||||||||||||| | |||  |||| ||||| |||||||| |||||||||||||||||||| ||||||| || |||||| ||||    
T  36496260 atgaatgaaagggtttagggttgaaatcggcgattacagagagagaatggaaaggagaagagagaaaagggttaaggttgtgtaagaaacccgagtt 36496356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 82 - 164
Target Start/End: Complemental strand, 8247191 - 8247110
Alignment:
Q  82 agagagaaaagggttagggttgtgcaaaaaacccaagttaccccttcaaagtgttcaaatcttaagggcaaaatcgtgatttt 164  Q
    ||||||| |||| ||||| ||||||||||||||||| || ||| ||||||  |||||||| ||||||||||||||||||||||    
T  8247191 agagagagaaggattaggtttgtgcaaaaaacccaaattgccc-ttcaaatggttcaaattttaagggcaaaatcgtgatttt 8247110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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