View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_high_28 (Length: 390)

Name: NF0821_high_28
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_high_28
NF0821_high_28
[»] chr6 (19 HSPs)
chr6 (131-321)||(5433658-5433840)
chr6 (232-317)||(5176455-5176540)
chr6 (232-317)||(5278282-5278367)
chr6 (254-319)||(5147174-5147239)
chr6 (254-326)||(5284660-5284732)
chr6 (211-319)||(5690437-5690544)
chr6 (254-301)||(5257630-5257677)
chr6 (256-314)||(5182210-5182268)
chr6 (254-319)||(5396688-5396753)
chr6 (255-319)||(5128695-5128759)
chr6 (256-319)||(5096448-5096511)
chr6 (240-319)||(5354892-5354971)
chr6 (256-316)||(5102895-5102955)
chr6 (256-315)||(5066976-5067035)
chr6 (254-301)||(5344599-5344646)
chr6 (256-298)||(5446897-5446939)
chr6 (256-316)||(5157909-5157969)
chr6 (256-316)||(5370311-5370371)
chr6 (256-316)||(5425650-5425710)
[»] chr3 (5 HSPs)
chr3 (327-385)||(51805610-51805668)
chr3 (255-324)||(47987125-47987194)
chr3 (255-324)||(47996412-47996481)
chr3 (255-324)||(48005699-48005768)
chr3 (255-324)||(48014984-48015053)
[»] chr5 (1 HSPs)
chr5 (254-321)||(8877347-8877414)
[»] chr4 (4 HSPs)
chr4 (256-319)||(4124217-4124280)
chr4 (327-385)||(20017396-20017454)
chr4 (257-319)||(4344387-4344449)
chr4 (258-319)||(4335087-4335148)
[»] chr7 (1 HSPs)
chr7 (256-317)||(36214109-36214170)


Alignment Details
Target: chr6 (Bit Score: 102; Significance: 1e-50; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 131 - 321
Target Start/End: Original strand, 5433658 - 5433840
Alignment:
Q  131 tagaaataaatagagacaaatctaatgtaaatatattactttcaacgtttaaggttagtgatacatagtagttgcattcgtttattatttaaagcttctt 230  Q
    |||||||||||| | ||||||||||||||||| | |||||||        ||||||||||||||||||||||||| |||||||||||||||| |||| ||    
T  5433658 tagaaataaataaatacaaatctaatgtaaatgtcttacttt--------aaggttagtgatacatagtagttgctttcgtttattatttaatgcttatt 5433749  T
Q  231 ccctatgtcttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaa 321  Q
    ||||||||||||||||| || | | ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||| |||||||||||    
T  5433750 ccctatgtcttctcttttatttttgtgttcttgcagagaatggagaagctgaaaattcttaaccttagtcattgtcattatctgacacaaa 5433840  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 5176455 - 5176540
Alignment:
Q  232 cctatgtcttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgaca 317  Q
    |||| ||||||| |||||| | | ||||||||||||||||||||||||||||||||||||| |||||||| | ||||| |||||||    
T  5176455 cctaagtcttctatttaatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgaca 5176540  T

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Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 232 - 317
Target Start/End: Original strand, 5278282 - 5278367
Alignment:
Q  232 cctatgtcttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgaca 317  Q
    |||| ||||||| |||||| | | ||||||||||||||||||||||||||||||||||||| |||||||| | ||||| |||||||    
T  5278282 cctaagtcttctatttaatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgaca 5278367  T

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Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 319
Target Start/End: Complemental strand, 5147239 - 5147174
Alignment:
Q  254 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacaca 319  Q
    ||||||||||||||||||||||||||| |||||||| || |||||||||| ||||| | |||||||    
T  5147239 tatgttcttgcagaggatggagaagctaaaaattctcaagcttagtcactctcattatttgacaca 5147174  T

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Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 254 - 326
Target Start/End: Complemental strand, 5284732 - 5284660
Alignment:
Q  254 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaagccct 326  Q
    |||||||||||||||||||||||||||||||||||| || |||||||| |  |||| ||| |||| |||||||    
T  5284732 tatgttcttgcagaggatggagaagctgaaaattctcaatcttagtcattcccattatctcacacgaagccct 5284660  T

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Target: chr6; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 211 - 319
Target Start/End: Complemental strand, 5690544 - 5690437
Alignment:
Q  211 tttattatttaaagcttcttccctatgtcttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattt 310  Q
    |||||| ||| ||||||||| | || || ||||||||||| | ||| |||||| ||| |||||||||||| |||||||| || |||||||||| |||||     
T  5690544 tttattttttgaagcttcttacataagt-ttctctttaatatttatattcttgtagatgatggagaagcttaaaattctcaatcttagtcactctcatta 5690446  T
Q  311 tctgacaca 319  Q
    |||||||||    
T  5690445 tctgacaca 5690437  T

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Target: chr6; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 301
Target Start/End: Complemental strand, 5257677 - 5257630
Alignment:
Q  254 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtca 301  Q
    |||||||||||||||||||||||||||||||||||| || ||||||||    
T  5257677 tatgttcttgcagaggatggagaagctgaaaattctcaatcttagtca 5257630  T

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Target: chr6; HSP #8
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 256 - 314
Target Start/End: Complemental strand, 5182268 - 5182210
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctg 314  Q
    |||||||||||||| ||||||||||||||||||| || |||||||| | ||||||||||    
T  5182268 tgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattttctg 5182210  T

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Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 254 - 319
Target Start/End: Original strand, 5396688 - 5396753
Alignment:
Q  254 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacaca 319  Q
    |||||||||||||||| ||||||||||||||||||| || |||||||| | ||||| | |||||||    
T  5396688 tatgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattatttgacaca 5396753  T

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Target: chr6; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 319
Target Start/End: Complemental strand, 5128759 - 5128695
Alignment:
Q  255 atgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacaca 319  Q
    ||||||||||||| ||||||||||||||||||||| || | |||||| | ||||| |||||||||    
T  5128759 atgttcttgcagatgatggagaagctgaaaattctcaatcatagtcattctcattgtctgacaca 5128695  T

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Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 319
Target Start/End: Original strand, 5096448 - 5096511
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacaca 319  Q
    ||||||||||||||||||| || ||||||||||| || |||||||| | ||||| |||||||||    
T  5096448 tgttcttgcagaggatggaaaaactgaaaattctaaatcttagtcattctcattgtctgacaca 5096511  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 240 - 319
Target Start/End: Complemental strand, 5354971 - 5354892
Alignment:
Q  240 ttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacaca 319  Q
    ||||||||||| | ||||||||||||||| |||||| | ||||||||||| || |||||||| |  |||| |||||||||    
T  5354971 ttctctttaatatgtatgttcttgcagagaatggagcatctgaaaattctcaatcttagtcattcacattgtctgacaca 5354892  T

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Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 5102955 - 5102895
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgac 316  Q
    |||||||||||||| |||| |||||||||||||| || |||||||| | ||||| ||||||    
T  5102955 tgttcttgcagaggttggaaaagctgaaaattctaaatcttagtcattctcattgtctgac 5102895  T

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Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 256 - 315
Target Start/End: Complemental strand, 5067035 - 5066976
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctga 315  Q
    ||||||||||||||||||| |||||||||||||| || ||||| || | ||||| |||||    
T  5067035 tgttcttgcagaggatggaaaagctgaaaattctaaatcttagccattctcattgtctga 5066976  T

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Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 5344599 - 5344646
Alignment:
Q  254 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtca 301  Q
    ||||||||| |||| ||||||||||||||||||||| || ||||||||    
T  5344599 tatgttcttacagatgatggagaagctgaaaattctcaatcttagtca 5344646  T

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Target: chr6; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 256 - 298
Target Start/End: Original strand, 5446897 - 5446939
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattcttaaacttag 298  Q
    ||||||||||||||||||||||||| |||||||| || |||||    
T  5446897 tgttcttgcagaggatggagaagctaaaaattctcaatcttag 5446939  T

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Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Complemental strand, 5157969 - 5157909
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgac 316  Q
    |||||||||||| |||||| ||||| |||||||| || |||||||| | ||||| ||||||    
T  5157969 tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgac 5157909  T

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Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 5370311 - 5370371
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgac 316  Q
    |||||||||||| |||||| ||||| |||||||| || |||||||| | ||||| ||||||    
T  5370311 tgttcttgcagatgatggaaaagctaaaaattctaaatcttagtcattctcattgtctgac 5370371  T

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Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 316
Target Start/End: Original strand, 5425650 - 5425710
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgac 316  Q
    |||| |||||| ||||||| |||||||||||||| || |||||||| | ||||| ||||||    
T  5425650 tgtttttgcagtggatggaaaagctgaaaattctaaatcttagtcattctcattgtctgac 5425710  T

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Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 327 - 385
Target Start/End: Original strand, 51805610 - 51805668
Alignment:
Q  327 agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt 385  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51805610 agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt 51805668  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 47987194 - 47987125
Alignment:
Q  255 atgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaagcc 324  Q
    ||||||||||||| |||||| ||||| |||||||| || |||||||| | ||||| ||| |||| |||||    
T  47987194 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagcc 47987125  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 47996481 - 47996412
Alignment:
Q  255 atgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaagcc 324  Q
    ||||||||||||| |||||| ||||| |||||||| || |||||||| | ||||| ||| |||| |||||    
T  47996481 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagcc 47996412  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 48005768 - 48005699
Alignment:
Q  255 atgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaagcc 324  Q
    ||||||||||||| |||||| ||||| |||||||| || |||||||| | ||||| ||| |||| |||||    
T  48005768 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagcc 48005699  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 324
Target Start/End: Complemental strand, 48015053 - 48014984
Alignment:
Q  255 atgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaagcc 324  Q
    ||||||||||||| |||||| ||||| |||||||| || |||||||| | ||||| ||| |||| |||||    
T  48015053 atgttcttgcagaagatggaaaagctaaaaattctcaatcttagtcattctcattatctcacacgaagcc 48014984  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 254 - 321
Target Start/End: Original strand, 8877347 - 8877414
Alignment:
Q  254 tatgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacacaaa 321  Q
    ||||||||||||||||||||||||||| |||||||| || ||||| |||| ||||  |||||||||||    
T  8877347 tatgttcttgcagaggatggagaagctaaaaattctcaatcttagccactctcatcatctgacacaaa 8877414  T

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Target: chr4 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 4124280 - 4124217
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacaca 319  Q
    ||||||||||||| |||||| ||||||||||||| || |||||||| | ||||| |||||||||    
T  4124280 tgttcttgcagagaatggagcagctgaaaattctcaatcttagtcattctcattatctgacaca 4124217  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 327 - 385
Target Start/End: Complemental strand, 20017454 - 20017396
Alignment:
Q  327 agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt 385  Q
    ||||||||||||||||||||||||||||| |||   |||||||||| || |||||||||    
T  20017454 agctgttgcaagtttttcaacaatccaagctctgaaggaatttgacttgcgaggaaatt 20017396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 257 - 319
Target Start/End: Original strand, 4344387 - 4344449
Alignment:
Q  257 gttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacaca 319  Q
    ||||||||||||||||||  ||||||||||||| || || ||||| | ||||| |||||||||    
T  4344387 gttcttgcagaggatggatcagctgaaaattctcaatctcagtcattctcattgtctgacaca 4344449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 258 - 319
Target Start/End: Original strand, 4335087 - 4335148
Alignment:
Q  258 ttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgacaca 319  Q
    |||||||||||||||||| || |||||||||| || |||||||| | ||||| ||| |||||    
T  4335087 ttcttgcagaggatggagcagttgaaaattctcaatcttagtcattctcattatctaacaca 4335148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 256 - 317
Target Start/End: Complemental strand, 36214170 - 36214109
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattcttaaacttagtcactgtcattttctgaca 317  Q
    |||||||||||||| |||| |||||||||||||| || |||||||| | ||||| |||||||    
T  36214170 tgttcttgcagaggctggaaaagctgaaaattctcaatcttagtcattctcattatctgaca 36214109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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