View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_high_31 (Length: 367)

Name: NF0821_high_31
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_high_31
NF0821_high_31
[»] chr6 (6 HSPs)
chr6 (189-319)||(6328969-6329099)
chr6 (189-319)||(6336548-6336666)
chr6 (189-318)||(6351533-6351650)
chr6 (70-152)||(6328810-6328892)
chr6 (70-192)||(6336368-6336497)
chr6 (70-192)||(6351353-6351482)
[»] chr3 (1 HSPs)
chr3 (6-64)||(51805610-51805668)
[»] chr4 (1 HSPs)
chr4 (6-64)||(20017396-20017454)


Alignment Details
Target: chr6 (Bit Score: 119; Significance: 1e-60; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 189 - 319
Target Start/End: Original strand, 6328969 - 6329099
Alignment:
Q  189 tttcaaaggaacacgtgattttggtgttgttgttctgtgtaacgaggttaagggtgtggttgtttttataggcatgaaaagttaatagggtttggtcaag 288  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6328969 tttcaaaggaacacgtgattttggtgttgttgttctatgtaacgaggttaagggtgtggttgtttttataggcatgaaaagttaatagggtttggtcaag 6329068  T
Q  289 cattaaaaagtacaacgctgcatgatgatgt 319  Q
    || | ||||||||||||||||||||||||||    
T  6329069 caatgaaaagtacaacgctgcatgatgatgt 6329099  T

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Target: chr6; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 189 - 319
Target Start/End: Original strand, 6336548 - 6336666
Alignment:
Q  189 tttcaaaggaacacgtgattttggtgttgttgttctgtgtaacgaggttaagggtgtggttgtttttataggcatgaaaagttaatagggtttggtcaag 288  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  6336548 tttcaaaggaacacgtgattttggtgttgttgttctatgtaacgaggtt------------gtttttataggcatgaaaagttaatagggtttggtcaag 6336635  T
Q  289 cattaaaaagtacaacgctgcatgatgatgt 319  Q
    |||| ||||||||||| ||||||||||||||    
T  6336636 cattgaaaagtacaacactgcatgatgatgt 6336666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 189 - 318
Target Start/End: Original strand, 6351533 - 6351650
Alignment:
Q  189 tttcaaaggaacacgtgattttggtgttgttgttctgtgtaacgaggttaagggtgtggttgtttttataggcatgaaaagttaatagggtttggtcaag 288  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||            |||||||||||||||||||||||||||||||||||||||    
T  6351533 tttcaaaggaacacgtgattttggtgttgttgttctatgtaacgaggtt------------gtttttataggcatgaaaagttaatagggtttggtcaag 6351620  T
Q  289 cattaaaaagtacaacgctgcatgatgatg 318  Q
    |||| ||||||||||| |||||||||||||    
T  6351621 cattgaaaagtacaacactgcatgatgatg 6351650  T

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Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 70 - 152
Target Start/End: Original strand, 6328810 - 6328892
Alignment:
Q  70 tttgtagtggttttgaaacggagattcttgatgattttttgcgggaccacacgagttgccattcaaaaacaagaaaatttgat 152  Q
    ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||    
T  6328810 tttgtggtggttttgaaacggagattcttgatgattttttgtgggaccacacgagttgccattcaaaaacaagaaattttgat 6328892  T

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Target: chr6; HSP #5
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 6336368 - 6336497
Alignment:
Q  70 tttgtagtggttttgaaacggagattcttgatgattttttgcgggaccacacgagttgccattcaaaaacaagaaaatttgatat------tctttgatg 163  Q
    ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||      |  ||||||    
T  6336368 tttgtggtggttttgaaacggagattcttgatgatcttttgtgggaccacacgagttgccattcaataacaagaaaatttgagatttgagattcttgatg 6336467  T
Q  164 atg-tttagatttctttgacgttgtttttc 192  Q
    ||| ||| ||||||||||||||||||||||    
T  6336468 atgtttttgatttctttgacgttgtttttc 6336497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 70 - 192
Target Start/End: Original strand, 6351353 - 6351482
Alignment:
Q  70 tttgtagtggttttgaaacggagattcttgatgattttttgcgggaccacacgagttgccattcaaaaacaagaaaatttgatat------tctttgatg 163  Q
    ||||| ||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||| ||||||||||||||| ||      |  ||||||    
T  6351353 tttgtggtggttttgaaacggagattcttgatgatcttttgtgggaccacacgagttgccattcaataacaagaaaatttgagatttgagattcttgatg 6351452  T
Q  164 atg-tttagatttctttgacgttgtttttc 192  Q
    ||| ||| ||||||||||||||||||||||    
T  6351453 atgtttttgatttctttgacgttgtttttc 6351482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 6 - 64
Target Start/End: Complemental strand, 51805668 - 51805610
Alignment:
Q  6 aatttcctcacaagtcaaattccaaaggaacttggattgttgaaaaacttgcaacagct 64  Q
    |||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||    
T  51805668 aatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagct 51805610  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 6 - 64
Target Start/End: Original strand, 20017396 - 20017454
Alignment:
Q  6 aatttcctcacaagtcaaattccaaaggaacttggattgttgaaaaacttgcaacagct 64  Q
    ||||||||| |||||||||||||    || |||||||||||||||||||||||||||||    
T  20017396 aatttcctcgcaagtcaaattccttcagagcttggattgttgaaaaacttgcaacagct 20017454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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