View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_high_60 (Length: 273)

Name: NF0821_high_60
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_high_60
NF0821_high_60
[»] chr2 (1 HSPs)
chr2 (15-273)||(11330392-11330638)
[»] scaffold0288 (1 HSPs)
scaffold0288 (171-273)||(9876-9979)
[»] chr1 (3 HSPs)
chr1 (171-273)||(5362810-5362908)
chr1 (208-269)||(35409005-35409066)
chr1 (171-269)||(52319058-52319157)
[»] chr5 (3 HSPs)
chr5 (207-273)||(41658759-41658825)
chr5 (170-273)||(37097888-37097987)
chr5 (189-262)||(38646660-38646732)
[»] scaffold0301 (1 HSPs)
scaffold0301 (171-260)||(5879-5967)
[»] chr8 (1 HSPs)
chr8 (179-231)||(35908605-35908657)
[»] chr4 (2 HSPs)
chr4 (179-231)||(33911970-33912022)
chr4 (208-268)||(33827450-33827509)


Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 15 - 273
Target Start/End: Original strand, 11330392 - 11330638
Alignment:
Q  15 tatgttgagcaggttagcctagatattaccctaagtagagtgcctacttagattatagcagtaaaattcatcaaactctaaagggaagtgaaattggaca 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330392 tatgttgagcaggttagcctagatattaccctaagtagagtgcctacttagattatagcagtaaaattcatcaaactctaaagggaagtgaaattggaca 11330491  T
Q  115 ttcatgcagcaacttcaatcaataagtataacttttttctataggcaaatgttagttgttacttgttagtaaattgttagagggaagggggaaatgttag 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||             
T  11330492 ttcatgcagcaacttcaatcaataagtataacttttttctataggcaaatgttagttgttacttgttagtaaatttttagagggaaggggg--------- 11330582  T
Q  215 tttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctca 273  Q
       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11330583 ---ccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctca 11330638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0288 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0288
Description:

Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 9979 - 9876
Alignment:
Q  171 tgttacttgttagtaaattgtta-gagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag 269  Q
    ||||| ||||||||||||||||| ||| | ||||||||||||||||||| |||  || ||| ||| ||||||||||||||||||||||||| ||||| ||    
T  9979 tgttagttgttagtaaattgttaagagaggagggggaaatgttagtttctgggagtcaaacccgggacctccttcttaaatctccttcaacatccctgag 9880  T
Q  270 ctca 273  Q
    ||||    
T  9879 ctca 9876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 5362908 - 5362810
Alignment:
Q  171 tgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagc 270  Q
    ||||| |||||||||  ||||| ||||||||||| |||||||||||||| || || |||| ||| ||||||||||||||||||||||||| |||||||||    
T  5362908 tgttagttgttagta--ttgttggagggaagggg-aaatgttagtttccagg-attgaacacgggacctccttcttaaatctccttcaacctcccttagc 5362813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 35409005 - 35409066
Alignment:
Q  208 atgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag 269  Q
    ||||||||||| || |||  ||||||||||||||| ||| || ||||||||||| |||||||    
T  35409005 atgttagtttctggagatgaaactcggaacctcctcctttaaactccttcaacgacccttag 35409066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 52319157 - 52319058
Alignment:
Q  171 tgttacttgttagtaaattgttagag-ggaagggggaaatgttagtttccggggatcgaactcgga-acctccttcttaaatctccttcaacgtccctta 268  Q
    ||||| ||||||| ||||||||| || || |||| |||||||||||||| | | |||||| || || ||||||  |||||||||||||||||| ||||||    
T  52319157 tgttagttgttagcaaattgttaaagtgggagggagaaatgttagtttctgagaatcgaa-tctgagacctccggcttaaatctccttcaacgcccctta 52319059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 41658759 - 41658825
Alignment:
Q  207 aatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctca 273  Q
    |||||||||||||||| ||| ||  ||| | |||||||||||| ||||||| |||||||||||||||    
T  41658759 aatgttagtttccgggaatcaaatccgggaactccttcttaaacctccttcgacgtcccttagctca 41658825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 37097987 - 37097888
Alignment:
Q  170 ttgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag 269  Q
    |||||| ||||| |||||||| ||||  | || |||||||||||||| | | |||| |||| |||||||| |||   ||||||||||||| |||||||||    
T  37097987 ttgttagttgttcgtaaattggtagataggagagggaaatgttagtt-ctgaggatagaacccggaacctactt---aaatctccttcaatgtcccttag 37097892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 38646732 - 38646660
Alignment:
Q  189 tgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgt 262  Q
    |||||||||  |||| ||||||||||||| || |||||||||||  ||| ||| || |||||||||||||||||    
T  38646732 tgttagaggagagggagaaatgttagttttcgaggatcgaactcaaaacatccatc-taaatctccttcaacgt 38646660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0301 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0301
Description:

Target: scaffold0301; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 5967 - 5879
Alignment:
Q  171 tgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaac 260  Q
    ||||| |||||||||||||||| |||||||  | ||||| |||||||||| |||||||||    || ||||||||||||| |||||||||    
T  5967 tgttagttgttagtaaattgttggagggaatagagaaat-ttagtttccgtggatcgaaccgaaaatctccttcttaaatttccttcaac 5879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 35908657 - 35908605
Alignment:
Q  179 gttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaact 231  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||| ||| ||||    
T  35908657 gttagtacattgttagaggggagggggaaatgttagtttctgggaatccaact 35908605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 33912022 - 33911970
Alignment:
Q  179 gttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaact 231  Q
    ||||||| |||||||||||| ||||||||||||||||||| ||| ||| ||||    
T  33912022 gttagtacattgttagaggggagggggaaatgttagtttctgggaatccaact 33911970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 33827509 - 33827450
Alignment:
Q  208 atgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtccctta 268  Q
    ||||||||||||||| ||||||| ||  ||||||| |||||| |||||||||||| |||||    
T  33827509 atgttagtttccggg-atcgaacccgagacctcctccttaaagctccttcaacgttcctta 33827450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 6896 times since January 2019
Visitors: 5773