View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_high_61 (Length: 273)
Name: NF0821_high_61
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_high_61 |
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| [»] chr2 (1 HSPs) |
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| [»] scaffold0288 (1 HSPs) |
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| [»] chr1 (3 HSPs) |
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| [»] chr5 (3 HSPs) |
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| [»] scaffold0301 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 4 - 273
Target Start/End: Original strand, 11330381 - 11330638
Alignment:
| Q |
4 |
atgtcgaataatatgttgagcaggttagcctagatattaccctaagtagagtgcctacttagattatagcagtaaaattcatcaaactctaaagggaagt |
103 |
Q |
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||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11330381 |
atgtccaatactatgttgagcaggttagcctagatattaccctaagtagagtgcctacttagattatagcagtaaaattcatcaaactctaaagggaagt |
11330480 |
T |
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| Q |
104 |
gaaattggacattcatgcagcaacttcaatcaataagtataacttttttctataggcaaatgttagttgttacttgttagtaaattgttagagggaaggg |
203 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
11330481 |
gaaattggacattcatgcagcaacttcaatcaataagtataacttttttctataggcaaatgttagttgttacttgttagtaaatttttagagggaaggg |
11330580 |
T |
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| Q |
204 |
ggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctca |
273 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11330581 |
gg------------ccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctca |
11330638 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0288 (Bit Score: 52; Significance: 7e-21; HSPs: 1)
Name: scaffold0288
Description:
Target: scaffold0288; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 9979 - 9876
Alignment:
| Q |
171 |
tgttacttgttagtaaattgtta-gagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag |
269 |
Q |
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| T |
9979 |
tgttagttgttagtaaattgttaagagaggagggggaaatgttagtttctgggagtcaaacccgggacctccttcttaaatctccttcaacatccctgag |
9880 |
T |
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| Q |
270 |
ctca |
273 |
Q |
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|||| |
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| T |
9879 |
ctca |
9876 |
T |
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Target: chr1 (Bit Score: 48; Significance: 2e-18; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 171 - 273
Target Start/End: Complemental strand, 5362908 - 5362810
Alignment:
| Q |
171 |
tgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagc |
270 |
Q |
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||||| ||||||||| ||||| ||||||||||| |||||||||||||| || || |||| ||| ||||||||||||||||||||||||| ||||||||| |
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| T |
5362908 |
tgttagttgttagta--ttgttggagggaagggg-aaatgttagtttccagg-attgaacacgggacctccttcttaaatctccttcaacctcccttagc |
5362813 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 208 - 269
Target Start/End: Original strand, 35409005 - 35409066
Alignment:
| Q |
208 |
atgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag |
269 |
Q |
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||||||||||| || ||| ||||||||||||||| ||| || ||||||||||| ||||||| |
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| T |
35409005 |
atgttagtttctggagatgaaactcggaacctcctcctttaaactccttcaacgacccttag |
35409066 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 171 - 269
Target Start/End: Complemental strand, 52319157 - 52319058
Alignment:
| Q |
171 |
tgttacttgttagtaaattgttagag-ggaagggggaaatgttagtttccggggatcgaactcgga-acctccttcttaaatctccttcaacgtccctta |
268 |
Q |
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| T |
52319157 |
tgttagttgttagcaaattgttaaagtgggagggagaaatgttagtttctgagaatcgaa-tctgagacctccggcttaaatctccttcaacgcccctta |
52319059 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 35; Significance: 0.0000000001; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 207 - 273
Target Start/End: Original strand, 41658759 - 41658825
Alignment:
| Q |
207 |
aatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttagctca |
273 |
Q |
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|||||||||||||||| ||| || ||| | |||||||||||| ||||||| ||||||||||||||| |
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| T |
41658759 |
aatgttagtttccgggaatcaaatccgggaactccttcttaaacctccttcgacgtcccttagctca |
41658825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 170 - 273
Target Start/End: Complemental strand, 37097987 - 37097888
Alignment:
| Q |
170 |
ttgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtcccttag |
269 |
Q |
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|||||| ||||| |||||||| |||| | || |||||||||||||| | | |||| |||| |||||||| ||| ||||||||||||| ||||||||| |
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| T |
37097987 |
ttgttagttgttcgtaaattggtagataggagagggaaatgttagtt-ctgaggatagaacccggaacctactt---aaatctccttcaatgtcccttag |
37097892 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 189 - 262
Target Start/End: Complemental strand, 38646732 - 38646660
Alignment:
| Q |
189 |
tgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgt |
262 |
Q |
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| T |
38646732 |
tgttagaggagagggagaaatgttagttttcgaggatcgaactcaaaacatccatc-taaatctccttcaacgt |
38646660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0301 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0301
Description:
Target: scaffold0301; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 171 - 260
Target Start/End: Complemental strand, 5967 - 5879
Alignment:
| Q |
171 |
tgttacttgttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaac |
260 |
Q |
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||||| |||||||||||||||| ||||||| | ||||| |||||||||| ||||||||| || ||||||||||||| ||||||||| |
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| T |
5967 |
tgttagttgttagtaaattgttggagggaatagagaaat-ttagtttccgtggatcgaaccgaaaatctccttcttaaatttccttcaac |
5879 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 35908657 - 35908605
Alignment:
| Q |
179 |
gttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaact |
231 |
Q |
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||||||| |||||||||||| ||||||||||||||||||| ||| ||| |||| |
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| T |
35908657 |
gttagtacattgttagaggggagggggaaatgttagtttctgggaatccaact |
35908605 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 179 - 231
Target Start/End: Complemental strand, 33912022 - 33911970
Alignment:
| Q |
179 |
gttagtaaattgttagagggaagggggaaatgttagtttccggggatcgaact |
231 |
Q |
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||||||| |||||||||||| ||||||||||||||||||| ||| ||| |||| |
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| T |
33912022 |
gttagtacattgttagaggggagggggaaatgttagtttctgggaatccaact |
33911970 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 208 - 268
Target Start/End: Complemental strand, 33827509 - 33827450
Alignment:
| Q |
208 |
atgttagtttccggggatcgaactcggaacctccttcttaaatctccttcaacgtccctta |
268 |
Q |
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||||||||||||||| ||||||| || ||||||| |||||| |||||||||||| ||||| |
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| T |
33827509 |
atgttagtttccggg-atcgaacccgagacctcctccttaaagctccttcaacgttcctta |
33827450 |
T |
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