View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_high_70 (Length: 253)

Name: NF0821_high_70
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_high_70
NF0821_high_70
[»] chr8 (18 HSPs)
chr8 (73-205)||(28167900-28168032)
chr8 (73-205)||(41855968-41856100)
chr8 (77-198)||(41276176-41276297)
chr8 (73-205)||(484344-484476)
chr8 (73-205)||(42604548-42604680)
chr8 (73-205)||(40703458-40703590)
chr8 (73-200)||(24862443-24862570)
chr8 (74-205)||(41016940-41017071)
chr8 (73-200)||(15031416-15031543)
chr8 (73-200)||(18439274-18439401)
chr8 (83-190)||(22550173-22550280)
chr8 (79-205)||(44051535-44051661)
chr8 (74-200)||(45065775-45065901)
chr8 (86-189)||(42167923-42168026)
chr8 (86-198)||(26487576-26487688)
chr8 (86-198)||(38032882-38032994)
chr8 (92-198)||(19241635-19241741)
chr8 (92-198)||(19314819-19314925)
[»] chr7 (28 HSPs)
chr7 (73-205)||(42683510-42683642)
chr7 (73-205)||(48271758-48271890)
chr7 (73-205)||(17840306-17840438)
chr7 (73-205)||(41623188-41623320)
chr7 (73-205)||(46861165-46861297)
chr7 (74-200)||(34141959-34142085)
chr7 (76-205)||(28978203-28978332)
chr7 (74-200)||(21186269-21186395)
chr7 (75-200)||(36392796-36392921)
chr7 (73-205)||(9366207-9366339)
chr7 (79-205)||(48194078-48194204)
chr7 (73-205)||(34157787-34157916)
chr7 (79-205)||(40589850-40589976)
chr7 (73-205)||(20565746-20565878)
chr7 (79-205)||(45362263-45362389)
chr7 (73-205)||(10225177-10225309)
chr7 (86-205)||(28113376-28113495)
chr7 (73-200)||(42504350-42504477)
chr7 (86-205)||(4230593-4230712)
chr7 (92-192)||(20877007-20877107)
chr7 (86-190)||(43350377-43350481)
chr7 (86-198)||(22291966-22292078)
chr7 (86-205)||(1641652-1641771)
chr7 (86-198)||(42736111-42736222)
chr7 (86-205)||(15900376-15900495)
chr7 (86-198)||(17184320-17184431)
chr7 (122-185)||(3380049-3380112)
chr7 (95-171)||(16886001-16886077)
[»] chr6 (24 HSPs)
chr6 (73-205)||(13616869-13617001)
chr6 (74-205)||(32026593-32026724)
chr6 (74-205)||(32036652-32036783)
chr6 (74-205)||(34802153-34802284)
chr6 (73-205)||(6206473-6206605)
chr6 (73-205)||(11693440-11693572)
chr6 (73-200)||(13403917-13404044)
chr6 (73-205)||(27641163-27641295)
chr6 (73-200)||(32691684-32691811)
chr6 (79-205)||(29067587-29067713)
chr6 (79-205)||(29109176-29109302)
chr6 (73-182)||(35020248-35020356)
chr6 (74-200)||(14123812-14123941)
chr6 (86-198)||(12397916-12398027)
chr6 (86-186)||(20241340-20241440)
chr6 (86-186)||(22135324-22135424)
chr6 (86-186)||(22142677-22142777)
chr6 (74-199)||(32133644-32133772)
chr6 (122-185)||(17464487-17464550)
chr6 (88-185)||(30763971-30764068)
chr6 (86-185)||(33201401-33201500)
chr6 (86-200)||(21863891-21864005)
chr6 (126-200)||(14485951-14486024)
chr6 (133-185)||(11181811-11181863)
[»] chr2 (25 HSPs)
chr2 (73-205)||(35492634-35492766)
chr2 (73-205)||(19470591-19470723)
chr2 (74-205)||(2918334-2918465)
chr2 (74-205)||(16582913-16583044)
chr2 (73-205)||(3936391-3936523)
chr2 (73-205)||(43983714-43983846)
chr2 (73-200)||(22002814-22002941)
chr2 (74-205)||(23408824-23408955)
chr2 (74-205)||(41498088-41498219)
chr2 (73-200)||(28476494-28476621)
chr2 (74-205)||(43492563-43492694)
chr2 (73-205)||(17425778-17425910)
chr2 (73-205)||(40676388-40676520)
chr2 (73-200)||(39798960-39799087)
chr2 (86-205)||(33404871-33404990)
chr2 (79-205)||(3942495-3942621)
chr2 (86-198)||(6977952-6978064)
chr2 (96-198)||(37311618-37311720)
chr2 (86-198)||(17537886-17537998)
chr2 (86-205)||(5421258-5421377)
chr2 (86-189)||(15890958-15891060)
chr2 (86-200)||(16413249-16413362)
chr2 (86-198)||(34520693-34520805)
chr2 (86-198)||(24107746-24107858)
chr2 (156-200)||(23786762-23786806)
[»] chr4 (37 HSPs)
chr4 (77-200)||(56140004-56140127)
chr4 (73-205)||(6281493-6281625)
chr4 (73-205)||(34152254-34152386)
chr4 (74-205)||(44559295-44559426)
chr4 (79-205)||(34528788-34528914)
chr4 (73-198)||(37867557-37867682)
chr4 (73-205)||(6176405-6176537)
chr4 (73-205)||(21016267-21016399)
chr4 (73-205)||(49095730-49095862)
chr4 (73-192)||(51427182-51427302)
chr4 (74-205)||(956422-956553)
chr4 (79-205)||(1043836-1043962)
chr4 (79-205)||(39589872-39589998)
chr4 (77-205)||(9490576-9490704)
chr4 (73-205)||(41793892-41794024)
chr4 (73-200)||(40352871-40352998)
chr4 (73-205)||(49422726-49422854)
chr4 (74-205)||(49572208-49572339)
chr4 (73-200)||(55797728-55797855)
chr4 (86-205)||(4784311-4784430)
chr4 (86-205)||(42887399-42887518)
chr4 (92-198)||(49816391-49816497)
chr4 (86-205)||(21410947-21411066)
chr4 (86-192)||(36775466-36775572)
chr4 (86-198)||(21170599-21170711)
chr4 (86-198)||(49790907-49791019)
chr4 (86-198)||(51026766-51026878)
chr4 (86-205)||(21412380-21412499)
chr4 (86-192)||(2774140-2774245)
chr4 (86-198)||(4910611-4910723)
chr4 (92-190)||(43888476-43888574)
chr4 (86-198)||(45940661-45940773)
chr4 (86-185)||(9718377-9718475)
chr4 (86-185)||(25145652-25145751)
chr4 (86-189)||(24076245-24076348)
chr4 (104-185)||(17292805-17292886)
chr4 (92-190)||(17054403-17054501)
[»] chr5 (27 HSPs)
chr5 (73-205)||(34682898-34683030)
chr5 (73-205)||(8538963-8539095)
chr5 (78-205)||(20199451-20199578)
chr5 (73-205)||(18309366-18309498)
chr5 (73-205)||(3602448-3602579)
chr5 (73-205)||(25499187-25499319)
chr5 (73-200)||(11028434-11028561)
chr5 (74-205)||(11347788-11347919)
chr5 (73-200)||(8575237-8575364)
chr5 (73-192)||(35566377-35566496)
chr5 (73-200)||(38855141-38855268)
chr5 (73-205)||(6321-6453)
chr5 (73-205)||(19035766-19035898)
chr5 (73-200)||(35927056-35927181)
chr5 (74-200)||(27660473-27660599)
chr5 (73-189)||(1399288-1399404)
chr5 (74-200)||(30710587-30710713)
chr5 (86-198)||(7484470-7484582)
chr5 (92-192)||(1695934-1696034)
chr5 (95-198)||(1972506-1972609)
chr5 (86-198)||(6792424-6792536)
chr5 (92-198)||(36349281-36349386)
chr5 (86-185)||(7400831-7400930)
chr5 (86-198)||(4723068-4723178)
chr5 (101-185)||(31239140-31239224)
chr5 (90-185)||(10978414-10978509)
chr5 (86-185)||(8531273-8531372)
[»] chr3 (43 HSPs)
chr3 (73-205)||(2429584-2429716)
chr3 (73-205)||(55268049-55268181)
chr3 (73-205)||(45099439-45099571)
chr3 (74-205)||(34692272-34692403)
chr3 (73-200)||(43570982-43571109)
chr3 (73-205)||(2267573-2267705)
chr3 (73-205)||(13894875-13895006)
chr3 (73-205)||(41579025-41579157)
chr3 (80-200)||(43478134-43478254)
chr3 (77-205)||(49217717-49217845)
chr3 (73-205)||(52568409-52568541)
chr3 (73-205)||(54391441-54391573)
chr3 (73-200)||(46406004-46406131)
chr3 (74-205)||(49139142-49139273)
chr3 (73-200)||(55205916-55206042)
chr3 (79-205)||(49611260-49611386)
chr3 (73-205)||(7247158-7247291)
chr3 (73-205)||(4003242-4003374)
chr3 (73-205)||(34050726-34050858)
chr3 (73-205)||(36136014-36136145)
chr3 (73-205)||(51694524-51694656)
chr3 (73-200)||(2645969-2646096)
chr3 (73-205)||(46345575-46345707)
chr3 (86-205)||(34646191-34646310)
chr3 (73-200)||(3494117-3494244)
chr3 (86-198)||(11377958-11378070)
chr3 (86-198)||(49274547-49274659)
chr3 (73-198)||(50458227-50458355)
chr3 (86-198)||(34471038-34471150)
chr3 (86-198)||(44928588-44928700)
chr3 (88-198)||(51012263-51012373)
chr3 (88-205)||(27096660-27096777)
chr3 (86-205)||(20374947-20375065)
chr3 (86-205)||(27188201-27188320)
chr3 (97-198)||(14632606-14632707)
chr3 (86-198)||(51016416-51016528)
chr3 (124-200)||(3497811-3497887)
chr3 (86-197)||(30193663-30193774)
chr3 (86-198)||(10052334-10052445)
chr3 (86-198)||(46413265-46413378)
chr3 (74-114)||(24701353-24701393)
chr3 (86-185)||(50341432-50341531)
chr3 (94-138)||(42322410-42322454)
[»] chr1 (38 HSPs)
chr1 (73-205)||(35525164-35525295)
chr1 (74-200)||(42570763-42570889)
chr1 (73-205)||(13974033-13974165)
chr1 (73-206)||(27485689-27485821)
chr1 (73-205)||(29437041-29437172)
chr1 (73-205)||(41803333-41803465)
chr1 (73-189)||(46142438-46142554)
chr1 (73-205)||(49925416-49925548)
chr1 (73-188)||(18974418-18974533)
chr1 (73-200)||(48227618-48227745)
chr1 (79-205)||(51270916-51271042)
chr1 (73-206)||(26494565-26494698)
chr1 (79-200)||(29761152-29761273)
chr1 (73-205)||(49428446-49428578)
chr1 (73-200)||(13634391-13634518)
chr1 (80-205)||(36910995-36911119)
chr1 (73-205)||(24363034-24363166)
chr1 (73-205)||(49397753-49397885)
chr1 (92-186)||(6436846-6436940)
chr1 (86-198)||(23343637-23343749)
chr1 (86-198)||(35585880-35585992)
chr1 (86-198)||(37779266-37779378)
chr1 (86-198)||(39856221-39856333)
chr1 (116-205)||(44336885-44336974)
chr1 (86-198)||(15355762-15355874)
chr1 (86-197)||(17685308-17685419)
chr1 (131-205)||(26634175-26634249)
chr1 (86-198)||(38044182-38044294)
chr1 (130-205)||(14172727-14172802)
chr1 (86-192)||(49260663-49260769)
chr1 (73-181)||(13284564-13284675)
chr1 (86-198)||(35186121-35186233)
chr1 (86-197)||(24269346-24269457)
chr1 (92-173)||(12790273-12790354)
chr1 (92-187)||(40532366-40532461)
chr1 (86-170)||(31451459-31451543)
chr1 (86-185)||(14771762-14771861)
chr1 (86-185)||(16531181-16531280)
[»] scaffold0176 (1 HSPs)
scaffold0176 (74-200)||(2884-3010)
[»] scaffold0618 (1 HSPs)
scaffold0618 (73-205)||(4529-4661)
[»] scaffold0494 (1 HSPs)
scaffold0494 (73-200)||(5817-5944)
[»] scaffold0589 (1 HSPs)
scaffold0589 (86-198)||(5420-5532)
[»] scaffold0859 (1 HSPs)
scaffold0859 (86-198)||(1456-1568)
[»] scaffold0258 (1 HSPs)
scaffold0258 (86-183)||(9610-9707)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 4e-62; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 28167900 - 28168032
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28167900 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 28167999  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||| ||||||| ||||    
T  28168000 ccgctcctcctcaacctcgactgattgtacacc 28168032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 41856100 - 41855968
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||    
T  41856100 ccattacattcattcttccttgtcacacaaatcaatcgggttgcccgctacagtccctggggcaccttgttttggttaagaaccaaaatagcatgtcctc 41856001  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  41856000 ccgctcctcctcaacctcgagtgattgtacacc 41855968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 77 - 198
Target Start/End: Original strand, 41276176 - 41276297
Alignment:
Q  77 tacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgc 176  Q
    ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  41276176 tacattcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgc 41276275  T
Q  177 tcctcctcaacctcgagtgatt 198  Q
    ||||||||||||||||||||||    
T  41276276 tcctcctcaacctcgagtgatt 41276297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 484476 - 484344
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  484476 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccaaaatagcatgtcctc 484377  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  484376 ccgctcctcctcaacctcgagtgattgtacacc 484344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 42604548 - 42604680
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||  ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  42604548 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccactggagtccctggggcaccttgttttggttgaggatcgaaatagcatgtcctc 42604647  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  42604648 ccgctcctcctcaacctcgagtgattgtacacc 42604680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 40703458 - 40703590
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||| ||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||| | |||||||||||||||    
T  40703458 ccattacattaattcttcctcgtcacacaagtcaatcgggttgcacactacagtccctggggcaccttgttttggttgaggatcgaaatagcatgtcctc 40703557  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
     ||||||||||||||||| ||||||||| ||||    
T  40703558 ttgctcctcctcaacctctagtgattgtacacc 40703590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 24862443 - 24862570
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||| ||||||||||||||||||| |||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||    
T  24862443 ccattacattcattcatcctcgtcacacaagtcaaacgggtttcccgctacagtccctacggcaccttgttttggttgaggaccaaaatagcatgtcctc 24862542  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    |  |||||||||||||||||||||||||    
T  24862543 ccactcctcctcaacctcgagtgattgt 24862570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 41017071 - 41016940
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    ||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||    
T  41017071 cattacattcattcttcttcgtcacacaaatcaatcgggttgcccgctacagtccctgtggtaccttgttttggttgaggaccgaaatagcatgtcctcc 41016972  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
    ||||| |||||||||||| |||||||| ||||    
T  41016971 tgctcatcctcaacctcgtgtgattgtacacc 41016940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 15031543 - 15031416
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| ||||||||| |||||    
T  15031543 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatatcctc 15031444  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||||||||||||||||||||    
T  15031443 ccgctcctcctcaacctcgagtgattgt 15031416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 18439401 - 18439274
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||| |||||||||||||| ||| | || |||||| |||||||||||||||||||||||||||||||||||||||||    
T  18439401 ccattacattcattcttcctcgtcacaaaagtcaatcgggtttcccacaactgtccctagggcaccttgttttggttgaggaccaaaatagcatgtcctc 18439302  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||||||||| || |||||||    
T  18439301 ccgctcctcctcaacctggattgattgt 18439274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 83 - 190
Target Start/End: Original strand, 22550173 - 22550280
Alignment:
Q  83 cattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcc 182  Q
    ||||| |||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  22550173 cattcatcctcgtcacacaagtcaatcgggtttcccgctactgtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcc 22550272  T
Q  183 tcaacctc 190  Q
    ||||||||    
T  22550273 tcaacctc 22550280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 44051535 - 44051661
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||  |||||| | ||||| |||||||||||||||||||||||||| ||||    
T  44051535 cattcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccctacggcaccctcttttgattgaggaccaaaatagcatgtcctcccgctc 44051634  T
Q  179 ctcctcaacctcgagtgattgtgcacc 205  Q
    || ||||||||||||||||||| ||||    
T  44051635 cttctcaacctcgagtgattgtacacc 44051661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 45065775 - 45065901
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    ||||||||||||||||||||||||||||| |||||||| ||| |||||||||||| || || ||||||||||||||||||||| |||||||||||||| |    
T  45065775 cattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccatgcggtaccttgttttggttgaggaccgaaatagcatgtccttc 45065874  T
Q  174 tgctcctcctcaacctcgagtgattgt 200  Q
     |||||||| |||||||||||||||||    
T  45065875 cgctcctccccaacctcgagtgattgt 45065901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 42168026 - 42167923
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | |||||||| |||||||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  42168026 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccccggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 42167927  T
Q  186 acct 189  Q
    ||||    
T  42167926 acct 42167923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 26487576 - 26487688
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| | |||||||||||| |||||| |    ||||||||||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  26487576 tcttcctcatgacacaagtcaattgggttgtcattgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 26487675  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  26487676 acctcgaatgatt 26487688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 38032994 - 38032882
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | |||||||| ||| |||||  |||||| ||||||||||||||||||||||||| ||||||||| |    
T  38032994 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccccgggacacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctta 38032895  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  38032894 acctcgaatgatt 38032882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 19241741 - 19241635
Alignment:
Q  92 tcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcg 191  Q
    |||||||||||||||||||||||| ||   ||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||| ||||||||||| ||| |    
T  19241741 tcgtcacacaagtcaatcgggttgtccttgacagtccctggggcaactgcttttgggtgaggacaaaaatagtatgtcctcccgctcctcctcacccttg 19241642  T
Q  192 agtgatt 198  Q
    | |||||    
T  19241641 aatgatt 19241635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 19314925 - 19314819
Alignment:
Q  92 tcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcg 191  Q
    |||||||||||||||||||||||| ||   ||||||||||||||| ||  |||||| ||||||| ||||||| ||||||||| ||||||||||| ||| |    
T  19314925 tcgtcacacaagtcaatcgggttgtccttgacagtccctggggcaactgcttttgggtgaggacaaaaatagtatgtcctcccgctcctcctcacccttg 19314826  T
Q  192 agtgatt 198  Q
    | |||||    
T  19314825 aatgatt 19314819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 121; Significance: 4e-62; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 42683510 - 42683642
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42683510 ccattacattcattcttcctcatcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 42683609  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  42683610 ccgctcctcctcaacctcgagtgattgtacacc 42683642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 48271758 - 48271890
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  48271758 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcatc 48271857  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  48271858 ccgctcctcctcaacctcgagtgattgtacacc 48271890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 17840306 - 17840438
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  17840306 ccattacattcattcttcctcgtcacacaaatcaatcgggttgcccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 17840405  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  17840406 ccgctcctcctcaacctcgagtgattgtacacc 17840438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 41623188 - 41623320
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||     
T  41623188 ccattacattcattcttcctcatcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggatgaggaccaaaatagcatgtcctt 41623287  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||| ||||||| ||||    
T  41623288 ccgctcctcctcaacctcgactgattgtacacc 41623320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 46861297 - 46861165
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  46861297 ccattacattcattcttcctcgtcatacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatttcctc 46861198  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    |  ||||||||||| ||||||||||||| ||||    
T  46861197 ccactcctcctcaatctcgagtgattgtacacc 46861165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 34141959 - 34142085
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  34141959 cattacattcattcctcctcgtcacacaagtcaatcgggtttcccgctacagtccctgtggcaccttgttttggttgaggaccaaaatagcatgtcatcc 34142058  T
Q  174 tgctcctcctcaacctcgagtgattgt 200  Q
     ||||||||||||||||||||||||||    
T  34142059 cgctcctcctcaacctcgagtgattgt 34142085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 76 - 205
Target Start/End: Complemental strand, 28978332 - 28978203
Alignment:
Q  76 ttacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctg 175  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||||||||||| |||||||||| |    
T  28978332 ttacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctgtggcgccttgtttttgttgaggaccaaaataacatgtcctcccg 28978233  T
Q  176 ctcctcctcaacctcgagtgattgtgcacc 205  Q
    ||||||||||||||||||||||||| ||||    
T  28978232 ctcctcctcaacctcgagtgattgtacacc 28978203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 21186395 - 21186269
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||    
T  21186395 cattacattcattcttcctcgtcacacaagtcaatcgagttgcccgctacagtccctagggcaccttgttttggttgaggaccaaaataacatgtcctcc 21186296  T
Q  174 tgctcctcctcaacctcgagtgattgt 200  Q
     ||||||||||||||| || |||||||    
T  21186295 cgctcctcctcaacctggattgattgt 21186269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 75 - 200
Target Start/End: Complemental strand, 36392921 - 36392796
Alignment:
Q  75 attacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcct 174  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||     
T  36392921 attacattaattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctgaggcaccttgttttggttgaggaccaaaataacatgtcctccc 36392822  T
Q  175 gctcctcctcaacctcgagtgattgt 200  Q
    ||||||||||||||| || |||||||    
T  36392821 gctcctcctcaacctggactgattgt 36392796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 9366339 - 9366207
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  9366339 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 9366240  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  9366239 ccgctcctcctcaacctcgagtgattgtacacc 9366207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 48194078 - 48194204
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| ||||||||||||||||||||| |||| ||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  48194078 cattcattcatcctcgtcacacaagtcaatcaggtttcccgctatagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 48194177  T
Q  179 ctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||||||||||||| ||||    
T  48194178 ctcctcaacctcgagtgattgtacacc 48194204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 34157787 - 34157916
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  34157787 ccattacattcattcttcctcgtcacacaaatcaatcgggttgcccgctacagtccctgtggtaccttgttttggttgaggaccgaaatagcatgtcctc 34157886  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |   |||||||||||||||||||||| ||||    
T  34157887 ccg---ctcctcaacctcgagtgattgtacacc 34157916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 40589850 - 40589976
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| |||||||||||||||||||||||||| || ||||| ||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||    
T  40589850 cattcattcatcctcgtcacacaagtcaatcgggtttcctgctacggtccctgcggcaccttgttttggttgatgaccaaaatagcatgtcctcccgctc 40589949  T
Q  179 ctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||||||||||||| ||||    
T  40589950 ctcctcaacctcgagtgattgtacacc 40589976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 20565746 - 20565878
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| || || || ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  20565746 ccattacattcattcttcctcgtcacacaaatcgattggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 20565845  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  20565846 ccgctcctcctcaacctcgagtgattgtacacc 20565878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 45362389 - 45362263
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| ||||||||||||||||||||||| || || |||||||||| || |||||||| |||||||||||||||||||||||||||||||| ||||    
T  45362389 cattcattcatcctcgtcacacaagtcaatcggatttcctgctacagtccttgcggcaccttcttttggttgaggaccaaaatagcatgtcctcccgctc 45362290  T
Q  179 ctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||||||||||||| ||||    
T  45362289 ctcctcaacctcgagtgattgtacacc 45362263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 10225177 - 10225309
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||| |||||||||||||||||||||||||||||||||||| |||||||| || ||| |||||||||||||||||||| ||||||||||||| ||| |    
T  10225177 ccattatattcattcttcctcgtcacacaagtcaatcgggttggccgctacaatctctgaggcaccttgttttggttgagaaccaaaatagcatttcccc 10225276  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||| ||||||| ||||    
T  10225277 ccgctcctcctcaacctcgactgattgtacacc 10225309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 28113495 - 28113376
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||| | || | |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||    
T  28113495 tcttcctcgtcacaaaggttactcgggttgcccgctacagtccctgtggcaccttgttttggttgaggaccaaaataacatgtcctcccgctcctcctca 28113396  T
Q  186 acctcgagtgattgtgcacc 205  Q
    ||||||| ||||||| ||||    
T  28113395 acctcgactgattgtacacc 28113376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 42504477 - 42504350
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||  ||||||||||||||||||||| ||||| || ||| ||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||    
T  42504477 ccattactgtcattcttcctcgtcacacaaatcaattggcttgtccgctacagtccctgcggtaccttcttttggttgaggaccgaaatagcatgtcctc 42504378  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||||||||||||||||||||    
T  42504377 ccgctcctcctcaacctcgagtgattgt 42504350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 4230593 - 4230712
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||||||||||||||||||| |||||| || | ||||||||||||||||||  ||||||||||||| |||||||||||||||||| ||||||||||     
T  4230593 tcttcctcgtcacacaagtcaattgggttgtcctcgacagtccctggggcacctgcttttggttgaggatcaaaatagcatgtcctcccgctcctcctcc 4230692  T
Q  186 acctcgagtgattgtgcacc 205  Q
    |||| || ||||||| ||||    
T  4230693 acctggaatgattgtacacc 4230712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 92 - 192
Target Start/End: Complemental strand, 20877107 - 20877007
Alignment:
Q  92 tcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcg 191  Q
    ||||||||||| |||||||||||| || | ||||||||||||||||||  |||||||||||||||||||||||||||||||| ||||||||| |||||||    
T  20877107 tcgtcacacaattcaatcgggttgtcctcgacagtccctggggcacctgcttttggttgaggaccaaaatagcatgtcctcccgctcctcctaaacctcg 20877008  T
Q  192 a 192  Q
    |    
T  20877007 a 20877007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 190
Target Start/End: Complemental strand, 43350481 - 43350377
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | ||||||||||||||||||  |||||||||| ||||||||||||||||||||| |||||||||||    
T  43350481 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggggcacctgcttttggttgaagaccaaaatagcatgtcctcccgctcctcctca 43350382  T
Q  186 acctc 190  Q
    |||||    
T  43350381 acctc 43350377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 22291966 - 22292078
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| ||||||||||||||  ||||| || | ||||||||||||||||||  |||||| | ||||||||||||||||||||||| |||||||||||    
T  22291966 tcttcctcatcacacaagtcaattaggttgtcctcgacagtccctggggcacctgcttttggctcaggaccaaaatagcatgtcctcccgctcctcctca 22292065  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  22292066 acctcgaatgatt 22292078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 1641771 - 1641652
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||||||||||||||||||  || ||| || |  |||| ||||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  1641771 tcttcctcgtcacacaagtcaactggattgtcctcgccagttcctggggcaccttcttttggttgaggaccaaaataacatgtcctcccgctcctcctca 1641672  T
Q  186 acctcgagtgattgtgcacc 205  Q
    ||||||  ||||||| ||||    
T  1641671 acctcgtttgattgtacacc 1641652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 42736111 - 42736222
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | |||||||||||| |||||  |||||| |||||||||||||||||||| |||| |||||||||||    
T  42736111 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggg-cacctgcttttggctgaggaccaaaatagcatgttctcccgctcctcctca 42736209  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  42736210 acctcgaatgatt 42736222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 15900495 - 15900376
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||||| || |||||||||| || | ||||||||||||||||||  |||||  |||||||||||||||||| ||||||  ||||||||||    
T  15900495 tcttcctcgtcacacaggttaatcgggttgtcctcgacagtccctggggcacctgcttttgactgaggaccaaaatagcatatcctcccactcctcctca 15900396  T
Q  186 acctcgagtgattgtgcacc 205  Q
     |||||| ||||||| ||||    
T  15900395 gcctcgactgattgtacacc 15900376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 17184320 - 17184431
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||| | |||||||||||||| |||||| || | ||| ||| ||||||||||  |||||| | ||||| || |||||||||||||| |||||||||||    
T  17184320 tcttccgcatcacacaagtcaattgggttgtcctcgacaatccatggggcacctgcttttggctaaggac-aatatagcatgtcctcccgctcctcctca 17184418  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  17184419 acctcgaatgatt 17184431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 3380112 - 3380049
Alignment:
Q  122 acagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||| || |||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  3380112 acagtccttgtggcacctgcttttggttgaggaccaaaatagcatgtcctcccgctcctcctca 3380049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 95 - 171
Target Start/End: Complemental strand, 16886077 - 16886001
Alignment:
Q  95 tcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcct 171  Q
    ||||| |||||||| |||||| || | | ||| |||| |||||||  ||||||||||||||||||||| || |||||    
T  16886077 tcacataagtcaattgggttgtcctcgagagttcctgtggcacctacttttggttgaggaccaaaataacaagtcct 16886001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 117; Significance: 1e-59; HSPs: 24)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 13617001 - 13616869
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13617001 ccattacattcattcttccttgtcacacaagtcaatcgggttgctcgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 13616902  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  13616901 ccgctcctcctcaacctcgagtgattgtacacc 13616869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 32026724 - 32026593
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32026724 cattacattcattcttcctcatcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtccacc 32026625  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
     |||||||||||||||||| | ||||| ||||    
T  32026624 cgctcctcctcaacctcgactaattgtacacc 32026593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 32036783 - 32036652
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  32036783 cattacattcattcttcctcatcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtccacc 32036684  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
     |||||||||||||||||| | ||||| ||||    
T  32036683 cgctcctcctcaacctcgactaattgtacacc 32036652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 34802284 - 34802153
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34802284 cattacattcattcttcctcgtcacacaagtcaaccgggttgcctgctacagtccctggggcaccttgttttggttgaggacaaaaatagcatgtcctcc 34802185  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
     |||||||||||||||||| ||||||| ||||    
T  34802184 cgctcctcctcaacctcgactgattgtacacc 34802153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 6206473 - 6206605
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  6206473 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 6206572  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  6206573 ccgctcctcctcaacctcgagtgattgtacacc 6206605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 11693440 - 11693572
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  11693440 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 11693539  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  11693540 ccgctcctcctcaacctcgagtgattgtacacc 11693572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 13403917 - 13404044
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||    
T  13403917 ccattacattcattcttcctcttcacacaagtctatcgggttgcccgctacagtccctggggcacctttttttggttgaggaccgaaatagcatgtcctc 13404016  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
      |||||||||||||||||| |||||||    
T  13404017 tcgctcctcctcaacctcgactgattgt 13404044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 27641163 - 27641295
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  27641163 ccattacattcattcttcctcgtcacacaaatcaattggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 27641262  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  27641263 ccgctcctcctcaacctcgagtgattgtacacc 27641295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 32691811 - 32691684
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  32691811 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 32691712  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | |||||||||||||||| ||| |||||    
T  32691711 ccgctcctcctcaacctcaagtaattgt 32691684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 29067587 - 29067713
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| |||| |||||||||||||||||||||  ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  29067587 cattcattcatccttgtcacacaagtcaatcgggttttccgctacagcccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 29067686  T
Q  179 ctcctcaacctcgagtgattgtgcacc 205  Q
     ||||||||||||||||||||| ||||    
T  29067687 atcctcaacctcgagtgattgtacacc 29067713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 29109176 - 29109302
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| |||| |||||||||||||||||||||  ||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  29109176 cattcattcatccttgtcacacaagtcaatcgggttttccgctacagcccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 29109275  T
Q  179 ctcctcaacctcgagtgattgtgcacc 205  Q
     ||||||||||||||||||||| ||||    
T  29109276 atcctcaacctcgagtgattgtacacc 29109302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 73 - 182
Target Start/End: Complemental strand, 35020356 - 35020248
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||||||||||||||| ||||| |||||||||    
T  35020356 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcca-ctacagtccctagggcaccttgttttggttgaggaccgaaataacatgtcctc 35020258  T
Q  173 ctgctcctcc 182  Q
    | ||||||||    
T  35020257 ccgctcctcc 35020248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 14123812 - 14123941
Alignment:
Q  74 cattacattcattc---ttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcc 170  Q
    ||||||||||||||   ||| |||||||||||||||||||||||||||||||||||||||| |||||||  ||||| || ||||||||| ||||||||||    
T  14123812 cattacattcattcatcttcatcgtcacacaagtcaatcgggttgcccgctacagtccctgcggcacctacttttgattaaggaccaaagtagcatgtcc 14123911  T
Q  171 tcctgctcctcctcaacctcgagtgattgt 200  Q
    |||  |||||||| |||||||| |||||||    
T  14123912 tcccactcctccttaacctcgactgattgt 14123941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 12397916 - 12398027
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | |||||||||||| |||||  |||||| |||||||||||||| |||||||||| |||||||||||    
T  12397916 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggg-cacctgcttttggctgaggaccaaaatatcatgtcctcccgctcctcctca 12398014  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  12398015 acctcgaatgatt 12398027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 20241440 - 20241340
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||||||||||||||||||| |||||| || | ||||||||| ||| ||||  |||||||||||||||||||||||||  |||||||||||||||||    
T  20241440 tcttcctcgtcacacaagtcaattgggttgtcctcaacagtcccttgggaacctgcttttggttgaggaccaaaatagcataacctcctgctcctcctca 20241341  T
Q  186 a 186  Q
    |    
T  20241340 a 20241340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 22135424 - 22135324
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||||||||||||||||||| |||||| || | ||||||||| ||| ||||  |||||||||||||||||||||||||  |||||||||||||||||    
T  22135424 tcttcctcgtcacacaagtcaattgggttgtcctcaacagtcccttgggaacctgcttttggttgaggaccaaaatagcataacctcctgctcctcctca 22135325  T
Q  186 a 186  Q
    |    
T  22135324 a 22135324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 186
Target Start/End: Complemental strand, 22142777 - 22142677
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||||||||||||||||||| |||||| || | ||||||||| ||| ||||  |||||||||||||||||||||||||  |||||||||||||||||    
T  22142777 tcttcctcgtcacacaagtcaattgggttgtcctcaacagtcccttgggaacctgcttttggttgaggaccaaaatagcataacctcctgctcctcctca 22142678  T
Q  186 a 186  Q
    |    
T  22142677 a 22142677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 74 - 199
Target Start/End: Complemental strand, 32133772 - 32133644
Alignment:
Q  74 cattacattcattc---ttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcc 170  Q
    ||||||||||||||   |||||||||||||| ||||||| ||||| |  | ||||||||||||| ||||  |||||| ||||||||||||||||||||||    
T  32133772 cattacattcattcatcttcctcgtcacacaggtcaatcaggttgtcatcgacagtccctggggaacctgcttttggctgaggaccaaaatagcatgtcc 32133673  T
Q  171 tcctgctcctcctcaacctcgagtgattg 199  Q
    ||   |||||| ||| |||||| ||||||    
T  32133672 tctcactcctcttcagcctcgactgattg 32133644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 122 - 185
Target Start/End: Complemental strand, 17464550 - 17464487
Alignment:
Q  122 acagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||| |||||  ||||||||||||||||||||| |||||||||| |||||||||||    
T  17464550 acagtccctgggacacctgcttttggttgaggaccaaaataacatgtcctcccgctcctcctca 17464487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 88 - 185
Target Start/End: Complemental strand, 30764068 - 30763971
Alignment:
Q  88 ttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||||||||||||||||| |||||| || | ||||||| ||||||||    ||||||||||||||| ||||| |||||| | | |||||||||||    
T  30764068 ttcctcgtcacacaagtcaattgggttgtcctcgacagtccatggggcactcgcttttggttgaggaccgaaataacatgtcattccgctcctcctca 30763971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 33201401 - 33201500
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||||||||||||  ||||| || | ||| ||||||| ||||||  ||||||||||||||| | ||| |||||||| | |||| ||||||    
T  33201401 tcttcctcgtcacacaagtcaattaggttgtcctcgacattccctggcgcacctgattttggttgaggaccgatataacatgtccttccgctcttcctca 33201500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 21864005 - 21863891
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||| |||||||| |||||| || | |||||| ||||||||| |  ||||| | |||||||||| || |||||||| | ||| |||||||    
T  21864005 tcttcctcgtcacataagtcaattgggttgtcctcgacagtctctggggcacatgcttttgatcgaggaccaaagtaacatgtccttccgcttctcctca 21863906  T
Q  186 acctcgagtgattgt 200  Q
    || | || |||||||    
T  21863905 acttggaatgattgt 21863891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 200
Target Start/End: Complemental strand, 14486024 - 14485951
Alignment:
Q  126 tccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcgagtgattgt 200  Q
    ||||| ||||||||  ||||||||||| ||||||||| || ||||| ||||||||||||||||| || |||||||    
T  14486024 tccctagggcacctgcttttggttgagaaccaaaataacaagtcct-ctgctcctcctcaacctggaatgattgt 14485951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 185
Target Start/End: Complemental strand, 11181863 - 11181811
Alignment:
Q  133 ggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||  ||||||||||||||||||||| |||||| | | |||||||||||    
T  11181863 ggcacctgcttttggttgaggaccaaaataacatgtcattccgctcctcctca 11181811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 117; Significance: 1e-59; HSPs: 25)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 35492634 - 35492766
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35492634 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccactacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 35492733  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||| ||||| ||||    
T  35492734 ccgctcctcctcaacctcgagtaattgtacacc 35492766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 19470723 - 19470591
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  19470723 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctagggcaccttgttttggttgaggaccaaaatagcatgtcctc 19470624  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | ||||||||||||||| || ||||||| ||||    
T  19470623 ccgctcctcctcaacctggactgattgtacacc 19470591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 2918465 - 2918334
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||||||||||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  2918465 cattacattcattcttcctcgtcacacaagtcaaccgggttgcccactacagtccatggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 2918366  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
    ||||||||||||||||||| ||||||| ||||    
T  2918365 tgctcctcctcaacctcgactgattgtacacc 2918334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 16582913 - 16583044
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  16582913 cattacattcattcttcctcgtcacacaagtcaatcgggttgccctctacagtccctagggcaccttgtttttgttgaggaccaaaatagcatgtcctcc 16583012  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
     |||||||||||||||||||||||||| ||||    
T  16583013 cgctcctcctcaacctcgagtgattgtacacc 16583044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 3936523 - 3936391
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  3936523 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 3936424  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  3936423 ccgctcctcctcaacctcgagtgattgtacacc 3936391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 43983714 - 43983846
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  43983714 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 43983813  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  43983814 ccgctcctcctcaacctcgagtgattgtacacc 43983846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 22002814 - 22002941
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  22002814 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 22002913  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||||||||||||||||||||    
T  22002914 ccgctcctcctcaacctcgagtgattgt 22002941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 23408824 - 23408955
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||||||||||    
T  23408824 cattacattcattcttcctcatcacacaagtcaatcgggttgcccgctacaatccctggggtaccttgatttggttgaggaccaaaatagcatgtcctcc 23408923  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
     |||||||||||| ||||| ||||||| ||||    
T  23408924 cgctcctcctcaaactcgactgattgtacacc 23408955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 41498219 - 41498088
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  41498219 cattacattcattcttacttgtcacacaagtcaatcgggttggccgctacagtccctggggcaccttgttttggttgaggaccgaaatagcatgtcctcc 41498120  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
     ||||||||||||||| || ||||||| ||||    
T  41498119 cgctcctcctcaacctggactgattgtacacc 41498088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 28476494 - 28476621
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| ||||| || ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  28476494 ccattacattcattcttcctcgtcacacaaatcaattggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 28476593  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||||||||||||||||||||    
T  28476594 ccgctcctcctcaacctcgagtgattgt 28476621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 43492563 - 43492694
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  43492563 cattacattcattcttcctcgtcacacaagtcaatcgggttgtccgttacagtcactggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 43492662  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
      |||||| ||||||| || ||||||| ||||    
T  43492663 cactcctcgtcaacctggactgattgtacacc 43492694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 17425778 - 17425910
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| || || || ||| ||||||||||||||| || ||||||||||||||||||||  |||||||||||||||    
T  17425778 ccattacattcattcttcctcgtcacacaaatcgattggcttgtccgctacagtccctgcggtaccttgttttggttgaggactgaaatagcatgtcctc 17425877  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  17425878 ccgctcctcctcaacctcgagtgattgtacacc 17425910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 40676520 - 40676388
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||| ||||||||||| |||||||||||| |||||||||| ||||||||||||||||| || ||||| ||||||||||||||||    
T  40676520 ccattacattcattcttcctagtcacacaagtgaatcgggttgcctgctacagtccatggggcaccttgttttgattaaggacgaaaatagcatgtcctc 40676421  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | ||||||||||||||| || ||||||| ||||    
T  40676420 ccgctcctcctcaaccttgactgattgtacacc 40676388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 39799087 - 39798960
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||| | ||| |||||||||| |||| || ||||||||||||||||||||| |||||||||||||||    
T  39799087 ccattacattcattcttcctcgtcacacaaatcaatctgcttgtccgctacagttcctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 39798988  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | |||||||||||||| |||||||||||    
T  39798987 ccgctcctcctcaaccgcgagtgattgt 39798960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 33404871 - 33404990
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||||||||||||| | ||||||||||||||||||  |||||||||||||||||||||||||||||| | |||||||||||    
T  33404871 tcttcctcctcacacaagtcaatcgggttgccctcgacagtccctggggcacctacttttggttgaggaccaaaatagcatgtcctaccgctcctcctca 33404970  T
Q  186 acctcgagtgattgtgcacc 205  Q
    ||||||| ||||||| ||||    
T  33404971 acctcgactgattgtacacc 33404990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 3942495 - 3942621
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| | |||||||||||||||||||||||| ||||||||||||| ||  |||||||||||| |||||||||||||||||||| |||||| ||||    
T  3942495 cattcattcattctcgtcacacaagtcaatcgggtttcccgctacagtccatgccgcaccttgttttagttgaggaccaaaatagcatatcctcccgctc 3942594  T
Q  179 ctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||| ||||||||| ||||    
T  3942595 ctcctcaacctcaagtgattgtacacc 3942621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 6977952 - 6978064
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||| ||||| |||||| || | ||||||||| ||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  6977952 tcttcctcatcacacaaatcaattgggttgtcctcgacagtcccttgggcacctgcttttggttgaggaccaaaatagcatgtcctcccgctcctcctca 6978051  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  6978052 acctcgaatgatt 6978064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 198
Target Start/End: Complemental strand, 37311720 - 37311618
Alignment:
Q  96 cacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcgagtg 195  Q
    |||||||||||||||||||| || | ||||||||||||||||||  |||||| |||||| |||||||||||||||||| ||||||| |||||||||| ||    
T  37311720 cacacaagtcaatcgggttgtcctcgacagtccctggggcacctacttttggctgaggatcaaaatagcatgtcctcccgctcctcatcaacctcgaatg 37311621  T
Q  196 att 198  Q
    |||    
T  37311620 att 37311618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 17537998 - 17537886
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | ||||||  |||| |||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  17537998 tcttcctcatcacacaagtcaattgggttgtcctcgacagtctatgggacacctgtttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 17537899  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  17537898 acctcgaatgatt 17537886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 5421258 - 5421377
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | | ||||||||||||||||  |||||| |||||||||||||||||||| || | |||||||||||    
T  5421258 tcttcctcatcacacaagtcaattgggttgtcctcgagagtccctggggcacctgcttttggctgaggaccaaaatagcatgttctgccgctcctcctca 5421357  T
Q  186 acctcgagtgattgtgcacc 205  Q
    ||||| | ||||| ||||||    
T  5421358 acctcaaatgattatgcacc 5421377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 189
Target Start/End: Complemental strand, 15891060 - 15890958
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| |  | ||||||||||||||||||  |||||||||||||||||||||||||||||| | |||||||||||    
T  15891060 tcttcctcatcacacaagtcaattgggttgtct-cgacagtccctggggcacctgcttttggttgaggaccaaaatagcatgtccttccgctcctcctca 15890962  T
Q  186 acct 189  Q
    ||||    
T  15890961 acct 15890958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 200
Target Start/End: Complemental strand, 16413362 - 16413249
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||||||||||||||||||| || |  |||||||||  ||||||  |||||||||| |||||||||| |||||| ||| |||||||||||    
T  16413362 tcttcctcgtcacacaagtcaatcgggttgtcctcgccagtccctgcagcacctgcttttggttga-gaccaaaataacatgtcttcccgctcctcctca 16413264  T
Q  186 acctcgagtgattgt 200  Q
    ||||||| |||||||    
T  16413263 acctcgaatgattgt 16413249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 34520805 - 34520693
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| ||| || || | || |||||| ||||||||  |||||| ||| ||||||||||||||||||||| |||||||||||    
T  34520805 tcttcctcatcacacaagtcaattgggatgtcctcgacggtccctcgggcacctgcttttggctgaagaccaaaatagcatgtcctcccgctcctcctca 34520706  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  34520705 acctcgaatgatt 34520693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 24107858 - 24107746
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||  |||||||||||||| |||||| || | ||||||| | || |||||  |||||| |||||||||||||||||| |||||  |||||||||||    
T  24107858 tcttccttctcacacaagtcaattgggttgtcctcaacagtccataggacacctgcttttggctgaggaccaaaatagcatttcctctcgctcctcctca 24107759  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  24107758 acctcgaatgatt 24107746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 156 - 200
Target Start/End: Complemental strand, 23786806 - 23786762
Alignment:
Q  156 caaaatagcatgtcctcctgctcctcctcaacctcgagtgattgt 200  Q
    |||||||||||||| ||| ||||||||||||||||||||||||||    
T  23786806 caaaatagcatgtcatcccgctcctcctcaacctcgagtgattgt 23786762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 116; Significance: 4e-59; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 116; E-Value: 4e-59
Query Start/End: Original strand, 77 - 200
Target Start/End: Original strand, 56140004 - 56140127
Alignment:
Q  77 tacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgc 176  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  56140004 tacattcattcatcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgc 56140103  T
Q  177 tcctcctcaacctcgagtgattgt 200  Q
    ||||||||||||||||||||||||    
T  56140104 tcctcctcaacctcgagtgattgt 56140127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 6281625 - 6281493
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  6281625 ccattatattcattcttcctcgtcacacaagtcaatcgggttgcccgctaaagtccctggggcaccttgttttgattgaggatcaaaatagcatgtcctc 6281526  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||||||||||||||||||| ||||    
T  6281525 ctgctcctcctcaacctcgagtgattgtacacc 6281493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 34152386 - 34152254
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  34152386 ccattacattcattcttcctcgtcacacaagtcaaccgggttgcccgctacagtccctggggcaccttgatttggttgaggaccaaaatagcatgtcctc 34152287  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||| ||||||| ||||    
T  34152286 ccgctcctcctcaacctcgactgattgtacacc 34152254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 44559426 - 44559295
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||    
T  44559426 cattacattcattctgcctcgtcacacaagtcaaacgggttgcccgctacagtctctggggcaccttgatttggttgaggaccaaaatagcatgtcctcc 44559327  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
     |||||||||||||||||| ||||||| ||||    
T  44559326 cgctcctcctcaacctcgactgattgtacacc 44559295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 79 - 205
Target Start/End: Complemental strand, 34528914 - 34528788
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| |||||||||||||||||||||||||| ||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  34528914 cattcattcatcctcgtcacacaagtcaatcgggtttcccgctacaatccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 34528815  T
Q  179 ctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||||||||||||| ||||    
T  34528814 ctcctcaacctcgagtgattgtacacc 34528788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 73 - 198
Target Start/End: Original strand, 37867557 - 37867682
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||| ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||    
T  37867557 ccattacattcattattcctcgtcacacaagtcaattgggtcgcccgctacagtccctggggcaccttgtttttgttgaggaccaaaataacatgtcctc 37867656  T
Q  173 ctgctcctcctcaacctcgagtgatt 198  Q
    | ||||||||||||||||||||||||    
T  37867657 ccgctcctcctcaacctcgagtgatt 37867682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 6176537 - 6176405
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  6176537 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 6176438  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  6176437 ccgctcctcctcaacctcgagtgattgtacacc 6176405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 21016399 - 21016267
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  21016399 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 21016300  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  21016299 ccgctcctcctcaacctcgagtgattgtacacc 21016267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 49095730 - 49095862
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  49095730 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 49095829  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  49095830 ccgctcctcctcaacctcgagtgattgtacacc 49095862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 192
Target Start/End: Complemental strand, 51427302 - 51427182
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggacc-aaaatagcatgtcct 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||    
T  51427302 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctatagtccctggggcgccttgttttggttgaggaccaaaaatagcatgtcct 51427203  T
Q  172 cctgctcctcctcaacctcga 192  Q
    || ||||||||||||||||||    
T  51427202 cccgctcctcctcaacctcga 51427182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 956553 - 956422
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||||||||||||||||||||| ||| || |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  956553 cattacattcattcttcctcgtcacacaagccaaacgagttgcctgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 956454  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
     ||||||||||||||| || ||||||| ||||    
T  956453 cgctcctcctcaacctggactgattgtacacc 956422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 1043836 - 1043962
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||  ||||    
T  1043836 cattcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgttctctcgctc 1043935  T
Q  179 ctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||||||||||||| ||||    
T  1043936 ctcctcaacctcgagtgattgtacacc 1043962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 39589872 - 39589998
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||| ||||    
T  39589872 cattcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccctacggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 39589971  T
Q  179 ctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||| ||||||||| ||||    
T  39589972 ctcctcaacctcaagtgattgtacacc 39589998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 77 - 205
Target Start/End: Original strand, 9490576 - 9490704
Alignment:
Q  77 tacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgc 176  Q
    ||||| ||||| ||||| ||| |||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||| ||    
T  9490576 tacatccattcatcctcatcagacaagtcaatcgggttgcccgctatagtccctggggcaccttgttttggctgaggaccaaaatagcatgtcctccagc 9490675  T
Q  177 tcctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||||||||||||||| ||||    
T  9490676 tcctcctcaacctcgagtgattgtacacc 9490704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 41794024 - 41793892
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| || || || ||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  41794024 ccattacattcattcttcctcgtcacacaaatcgattggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccaaaatagcatgtcctc 41793925  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  41793924 ccgctcctcctcaacctcgagtgattgtacacc 41793892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 40352998 - 40352871
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||| ||| || ||||||||||||||||||||| |||||||||||||||    
T  40352998 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtcgctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 40352899  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | |||||||||||||||||| |||||||    
T  40352898 ccgctcctcctcaacctcgactgattgt 40352871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 49422854 - 49422726
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||||||    ||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  49422854 ccattacattcattcttcctcgtcacacaagtc----gggttgcccgctaaagtccttggggcaccttgttttggttgaggaccaaaatagcatgtcctc 49422759  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    |  ||||||||||||||||| ||||||| ||||    
T  49422758 ccactcctcctcaacctcgactgattgtacacc 49422726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 49572208 - 49572339
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    ||||||||||||||||||||||||||||||||||||||||||| | ||||| |||||  ||||||||||||||||||||||||||||||||||||| |||    
T  49572208 cattacattcattcttcctcgtcacacaagtcaatcgggttgcacactacaatccctatggcaccttgttttggttgaggaccaaaatagcatgtcatcc 49572307  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
     ||||||||||||||| || ||||||| ||||    
T  49572308 cgctcctcctcaacctggactgattgtacacc 49572339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 55797728 - 55797855
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| ||||| || ||| |||||||||||| || || ||||||||||||||||||||| |||||||||||||||    
T  55797728 ccattacattcattcttcctcgtcacacaaatcaattggcttgtccgctacagtccatgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 55797827  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||||||||||||||||||||    
T  55797828 ccgctcctcctcaacctcgagtgattgt 55797855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 4784430 - 4784311
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||||| || |||| ||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||||||||    
T  4784430 tcttcctcgtcacacaggttaatcaggttgcccgctacagtccctggggcacattcttttggttgaggaccaaaatagcatgtccccccgctcctcctca 4784331  T
Q  186 acctcgagtgattgtgcacc 205  Q
    ||||||| ||||||| ||||    
T  4784330 acctcgaatgattgtacacc 4784311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 42887399 - 42887518
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||||| || ||||||||| ||||||||||||  ||||||||||| ||||||||||||||||||||| |||||||||| |||||||||||    
T  42887399 tcttcctcgtcacacaggttaatcgggtttcccgctacagtcattggggcaccttcttttggttgaggaccaaaataacatgtcctcccgctcctcctca 42887498  T
Q  186 acctcgagtgattgtgcacc 205  Q
    ||||||| ||||||| ||||    
T  42887499 acctcgactgattgtacacc 42887518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 49816497 - 49816391
Alignment:
Q  92 tcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcg 191  Q
    |||||||||||||||||||||||| || | ||||||||| ||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  49816497 tcgtcacacaagtcaatcgggttgtcctcgacagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctccagctcctcctcaacctcg 49816398  T
Q  192 agtgatt 198  Q
    | |||||    
T  49816397 actgatt 49816391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 21411066 - 21410947
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||||||||||||||||||| |||||| || |  ||||||||| |||||||  |||||||||||||||||||||||||||||||| ||| |||||||    
T  21411066 tcttcctcgtcacacaagtcaattgggttgtcctcgccagtccctgtggcacctgcttttggttgaggaccaaaatagcatgtcctcccgcttctcctca 21410967  T
Q  186 acctcgagtgattgtgcacc 205  Q
    |||| || ||||||| ||||    
T  21410966 accttgactgattgtacacc 21410947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 36775572 - 36775466
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | || |||||||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  36775572 tcttcctcatcacacaagtcaattgggttgtcctcgacggtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 36775473  T
Q  186 acctcga 192  Q
    |||||||    
T  36775472 acctcga 36775466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 21170599 - 21170711
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | |||||||| |||||||||  |||||| ||||||||||||||||||||||| | |||||||||||    
T  21170599 tcttcctcatcacacaagtcaattgggttgtcctcgacagtcccgggggcacctgcttttggctgaggaccaaaatagcatgtccttccgctcctcctca 21170698  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  21170699 acctcgaatgatt 21170711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 49791019 - 49790907
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| ||||||  | | ||||||||||||||||||  |||||| |||||||||||||| |||||||||| |||||||||||    
T  49791019 tcttcctcatcacacaagtcaattgggttgttctcgacagtccctggggcacctgcttttggctgaggaccaaaatatcatgtcctcccgctcctcctca 49790920  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  49790919 acctcgaatgatt 49790907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 51026878 - 51026766
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| ||   ||||||||||||||||||  |||||| ||||||||||||||||||||| ||| |||||||||||    
T  51026878 tcttcctcatcacacaagtcaattgggttgtccttgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcatcccgctcctcctca 51026779  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  51026778 acctcgaatgatt 51026766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 21412380 - 21412499
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||||||||||||||||||| |||||| || |  ||||||| | |||||||  |||||||||||||||||||||||||||||||| ||| |||||||    
T  21412380 tcttcctcgtcacacaagtcaattgggttgtcctcgccagtcccagaggcacctgcttttggttgaggaccaaaatagcatgtcctcccgcttctcctca 21412479  T
Q  186 acctcgagtgattgtgcacc 205  Q
    |||| || ||||||| ||||    
T  21412480 accttgactgattgtacacc 21412499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 86 - 192
Target Start/End: Original strand, 2774140 - 2774245
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | |||||||| |||||||||  |||||||||| ||||||||||||||||||||| |||||||||||    
T  2774140 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccc-ggggcacctgcttttggttgaagaccaaaatagcatgtcctcccgctcctcctca 2774238  T
Q  186 acctcga 192  Q
    |||||||    
T  2774239 acctcga 2774245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 4910723 - 4910611
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||||||||||||||||||| |||||| || | ||||||||| ||||||||  |||||| ||||||||||||||||||||||||| |||| ||||||    
T  4910723 tcttcctcgtcacacaagtcaattgggttgtcctcgacagtccctagggcacctgcttttggatgaggaccaaaatagcatgtcctcccgctcttcctca 4910624  T
Q  186 acctcgagtgatt 198  Q
     ||| || |||||    
T  4910623 gcctagaatgatt 4910611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 43888574 - 43888476
Alignment:
Q  92 tcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctc 190  Q
    |||||||||||||||||||| ||| ||   ||||||||||||||||||  |||||| ||||| ||||||||||||||||||| ||||||||||||||||    
T  43888574 tcgtcacacaagtcaatcggattgtccttgacagtccctggggcacctgcttttggctgagggccaaaatagcatgtcctcccgctcctcctcaacctc 43888476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 45940661 - 45940773
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||| || |||||||||||||| | |||| || | |||||| || ||||||||  |||||| |||||||| |||||||||||||||| |||||||||||    
T  45940661 tcttcgtcatcacacaagtcaattgagttgtcctcgacagtctctagggcacctgcttttggctgaggacccaaatagcatgtcctcccgctcctcctca 45940760  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  45940761 acctcgaatgatt 45940773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 9718377 - 9718475
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||| |||||||||||||||||| |||||| || | ||||||||||| |||||| | ||||| |||||||||||||||||||||||||  ||||||||||    
T  9718377 tctttctcgtcacacaagtcaattgggttgtcctcgacagtccctggagcacct-gctttggctgaggaccaaaatagcatgtcctcccactcctcctca 9718475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 25145652 - 25145751
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||| |||||||| |||||| || | ||||||||||| ||||||  ||||||||||||||| ||||| |||||||| | |||||||||||    
T  25145652 tcttcctcgtcacataagtcaattgggttgtcctcgacagtccctggcgcacctgcttttggttgaggaccgaaataacatgtccttccgctcctcctca 25145751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 189
Target Start/End: Original strand, 24076245 - 24076348
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||||||| |||| |||||| || | | ||| ||||||||||||  ||||||||||||||| ||||| || ||||| | |||||||||||    
T  24076245 tcttcctcgtcacacaagacaattgggttgtcctcgagagtgcctggggcacctgcttttggttgaggaccgaaataacaagtccttccgctcctcctca 24076344  T
Q  186 acct 189  Q
    ||||    
T  24076345 acct 24076348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 104 - 185
Target Start/End: Original strand, 17292805 - 17292886
Alignment:
Q  104 tcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||| |||||| || | ||||||  ||||||||||  |||| |||||||||||||||||||||||||||||||||||||||    
T  17292805 tcaattgggttgtcctcgacagtctttggggcacctgctttttgttgaggaccaaaatagcatgtcctcctgctcctcctca 17292886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 92 - 190
Target Start/End: Complemental strand, 17054501 - 17054403
Alignment:
Q  92 tcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctc 190  Q
    ||||||||||||||||| |||||| |  | ||| ||| ||||| ||||  |||||| ||||||| ||| |||||||| |||| |||| || ||||||||    
T  17054501 tcgtcacacaagtcaattgggttgtcatcaacaatccatggggtacctgcttttggctgaggacaaaattagcatgtactcccgctcgtcgtcaacctc 17054403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 113; Significance: 3e-57; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 34683030 - 34682898
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  34683030 ccattacattcattcttcctcgtcacacaagtcaatcgagttgcccgctacagtccctggggaaccttgttttggttgaggaccaaaatagcatgtcctc 34682931  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||| ||||||| ||||    
T  34682930 ccgctcctcctcaacctcgactgattgtacacc 34682898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 8538963 - 8539095
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  || ||||||||||||||||||||| |||||||||||||||    
T  8538963 ccattacattcattcttcctcgtcacacaaatcaatcgggttgcccgctacagtccctacggtaccttgttttggttgaggaccgaaatagcatgtcctc 8539062  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||||||||||||||||||| ||||    
T  8539063 ctgctcctcctcaacctcgagtgattgtacacc 8539095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 20199451 - 20199578
Alignment:
Q  78 acattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgct 177  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||    
T  20199451 acattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcactttgttttggttgaggaccaaaatagcatgtcctcccgct 20199550  T
Q  178 cctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||| || ||||||| ||||    
T  20199551 cctcctcaacctggactgattgtacacc 20199578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 18309366 - 18309498
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||||||  |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  18309366 ccattacattcattcttcctcgtcacacaatgcaatcgggttgcccgctacagtcccttgggcaccttgttttggttgaggaccaaaatagcatgtcctc 18309465  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | ||||||||||||||| || ||||||| ||||    
T  18309466 ccgctcctcctcaacctggactgattgtacacc 18309498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 3602448 - 3602579
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  3602448 ccattacattcattcttcctcgtcacacaagtcaatcggattgtccgctacagtccctggg-caccttgttttggttgaggaccaaaatagcatgtcctc 3602546  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | ||||||||||||||| || ||||||| ||||    
T  3602547 ccgctcctcctcaacctggactgattgtacacc 3602579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 25499187 - 25499319
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||    
T  25499187 ccattacattcattcatcctcgtcacacaagtcaatcgggttgcccgctacagtccttggggcaccttgttttggttgaggaccaaaatagtatgtcctc 25499286  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||| |||| || ||||||| ||||    
T  25499287 ccgctcctcctccacctggactgattgtacacc 25499319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 11028434 - 11028561
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  11028434 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 11028533  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||||||||||||||||||||    
T  11028534 ccgctcctcctcaacctcgagtgattgt 11028561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 74 - 205
Target Start/End: Original strand, 11347788 - 11347919
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||| ||||||||||||||||| |||||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||    
T  11347788 cattgcattcattcttcctcgtaacacaaatcaatcgggttgcccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcc 11347887  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
     |||||||||||||||||||||||||| ||||    
T  11347888 cgctcctcctcaacctcgagtgattgtacacc 11347919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 8575364 - 8575237
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| |||||| |||||||| || ||||||||||||||||||||| |||||||||||||||    
T  8575364 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctatagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 8575265  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||||||||||||||||||||    
T  8575264 ccgctcctcctcaacctcgagtgattgt 8575237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 73 - 192
Target Start/End: Original strand, 35566377 - 35566496
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  35566377 ccattacattcaatcttcctcgtcacacaagtcaatcgggttggccgctacagtccctgaggcaccttgttttggttgaggaccaaaatagcatgtcctc 35566476  T
Q  173 ctgctcctcctcaacctcga 192  Q
      ||||| ||||||||||||    
T  35566477 acgctccgcctcaacctcga 35566496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 38855141 - 38855268
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||    
T  38855141 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaataacatgtcctc 38855240  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||||||||||||||||||||    
T  38855241 ccgctcctcctcaacctcgagtgattgt 38855268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 6453 - 6321
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| ||||| || ||  ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  6453 ccattacattcattcttcctcgtcacacaaatcaataggcttaaccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 6354  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  6353 ccgctcctcctcaacctcgagtgattgtacacc 6321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 19035898 - 19035766
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| || || || ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  19035898 ccattacattcattcttcctcgtcacacaaatcgattggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 19035799  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  19035798 ccgctcctcctcaacctcgagtgattgtacacc 19035766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 35927181 - 35927056
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||| |||||||||| |||||||||| |||||||  |||||||||||||||| |||||||||||||||||||||||||||||||    
T  35927181 ccattacattcattcttcctggtcacacaagccaatcgggtttcccgcta--gtccctggggcaccttcttttggttgaggaccaaaatagcatgtcctc 35927084  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | |||||||||||||||||| |||||||    
T  35927083 ccgctcctcctcaacctcgactgattgt 35927056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 27660599 - 27660473
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||||||| |||||||||||| |||||||| ||| ||| ||||||||||| || ||||||||||||||||||||| ||||||||||||||||    
T  27660599 cattacattcattctttctcgtcacacaaatcaatcggcttgtccgatacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcc 27660500  T
Q  174 tgctcctcctcaacctcgagtgattgt 200  Q
     ||||||||||||||||||||||||||    
T  27660499 cgctcctcctcaacctcgagtgattgt 27660473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 1399404 - 1399288
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||||||||||| |||||||  ||||||| ||||||||||||||||||||| ||||||| |||||||||||||||||    
T  1399404 ccattacattcattcttcctcgtcacacaagtcaaccgggttgttcgctacaatccctggggcaccttgttttgattgaggatcaaaatagcatgtcctc 1399305  T
Q  173 ctgctcctcctcaacct 189  Q
    | |||||||||||||||    
T  1399304 ccgctcctcctcaacct 1399288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 30710587 - 30710713
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    ||||||||| ||||||||||||||||||| ||||| || ||| |||||||||||||||  | ||||||||||||| ||||||| ||||| |||||||||     
T  30710587 cattacatttattcttcctcgtcacacaaatcaattggcttgtccgctacagtccctgcagtaccttgttttggtcgaggaccgaaataacatgtcctct 30710686  T
Q  174 tgctcctcctcaacctcgagtgattgt 200  Q
     ||||||||||||||||||||||||||    
T  30710687 cgctcctcctcaacctcgagtgattgt 30710713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 7484582 - 7484470
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||  || | ||||||||||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  7484582 tcttcctcatcacacaagtcaattgggttatcctcgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 7484483  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  7484482 acctcgaatgatt 7484470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 92 - 192
Target Start/End: Original strand, 1695934 - 1696034
Alignment:
Q  92 tcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcg 191  Q
    |||||||||||||||||||||||| || | ||||||| ||||||||||  |||||| ||||| ||||||||||||||||||| |||||||||||||||||    
T  1695934 tcgtcacacaagtcaatcgggttgtcctcgacagtccttggggcacctgcttttggctgagggccaaaatagcatgtcctcccgctcctcctcaacctcg 1696033  T
Q  192 a 192  Q
    |    
T  1696034 a 1696034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 198
Target Start/End: Original strand, 1972506 - 1972609
Alignment:
Q  95 tcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcgagt 194  Q
    |||||||||||||| || ||| || | ||||||||||||||||||  ||||| |||||||||||||||||||||||||| |||||||||||||||||| |    
T  1972506 tcacacaagtcaattggtttgtcctcgacagtccctggggcacctgcttttgcttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaat 1972605  T
Q  195 gatt 198  Q
    ||||    
T  1972606 gatt 1972609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 6792536 - 6792424
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||| ||| |||||||||||||| |||||| || | ||||||||| ||||| ||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  6792536 tcttgctcatcacacaagtcaattgggttgtcctcgacagtccctagggcatctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 6792437  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  6792436 acctcgaatgatt 6792424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 198
Target Start/End: Complemental strand, 36349386 - 36349281
Alignment:
Q  92 tcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcg 191  Q
    |||||||| ||||||||||||||| || | ||||||||||| ||||||  |||||| |||||||||||| |||||||||||| |||| ||||||||||||    
T  36349386 tcgtcacataagtcaatcgggttgtcctcgacagtccctggagcacctgcttttggctgaggaccaaaa-agcatgtcctcccgctcttcctcaacctcg 36349288  T
Q  192 agtgatt 198  Q
    | |||||    
T  36349287 aatgatt 36349281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 86 - 185
Target Start/End: Original strand, 7400831 - 7400930
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||||||||||||||||||| |||||| || | ||||||| || |||||||  ||||||||||||||| ||||| |||||||| | |||||||||||    
T  7400831 tcttcctcgtcacacaagtcaattgggttgtcctcgacagtccttgaggcacctgattttggttgaggaccgaaataacatgtccttccgctcctcctca 7400930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 4723178 - 4723068
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| ||||| |||||||| |||||| || | |||| || |||||| |||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  4723178 tcttcctcatcaca-aagtcaattgggttgtcctcgacag-ccttggggcgcctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 4723081  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  4723080 acctcgaatgatt 4723068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 101 - 185
Target Start/End: Original strand, 31239140 - 31239224
Alignment:
Q  101 aagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||| || | ||||||||| |||||| |  |||||||||||||||||||||||||||||| |  ||||||||||    
T  31239140 aagtcaattgggttgtcctccacagtccctagggcacgtgcttttggttgaggaccaaaatagcatgtccttccactcctcctca 31239224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 90 - 185
Target Start/End: Original strand, 10978414 - 10978509
Alignment:
Q  90 cctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||| || ||||| |||||| || |  |||| ||||||| ||||  ||||||||||||||||||||| || ||||| | |||||||||||    
T  10978414 cctcgtcacaaaattcaattgggttgtcctcgtcagttcctggggaacctgcttttggttgaggaccaaaataacaagtccttccgctcctcctca 10978509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 8531372 - 8531273
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||| |||||||| |||||| |  | || |||||| |||||| |  |||||||||||||||||| || || ||| | | |||||||||||    
T  8531372 tcttcctcgtcacataagtcaattgggttgtcgtcgacggtccctagggcacttgcttttggttgaggaccaaagtaacaagtcattccgctcctcctca 8531273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 113; Significance: 3e-57; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 2429584 - 2429716
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||    
T  2429584 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctatagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcttc 2429683  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||| ||||||||||||||||||| ||||    
T  2429684 ccgctcctgctcaacctcgagtgattgtacacc 2429716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 55268181 - 55268049
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||| |||||| |||||||||||||||    
T  55268181 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccactagagtccctggggcaccttgttttggttcaggaccgaaatagcatgtcctc 55268082  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  55268081 ccgctcctcctcaacctcgagtgattgtacacc 55268049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 45099571 - 45099439
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||    
T  45099571 ccattacattcattcttcctcgtcacaaaagtcaatcgggttgcccgctacagtccctggtgcaccttgttttggttgaggaccaaaataacatgtcctc 45099472  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||| ||||||||||||| ||||||| ||||    
T  45099471 ccgctcatcctcaacctcgactgattgtacacc 45099439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 34692403 - 34692272
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||    
T  34692403 cattacattcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccccgcggcaccttgttttggttgaggaccaaagtagcatgtcctcc 34692304  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
     |||||||||||||||||||||||||| ||||    
T  34692303 cgctcctcctcaacctcgagtgattgtacacc 34692272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 43570982 - 43571109
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||||||    
T  43570982 ccatcacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctgaggcaccttgatttggtcgaggaccaaaatagcatgtcctc 43571081  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | |||||||||||||||||| |||||||    
T  43571082 ccgctcctcctcaacctcgactgattgt 43571109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 2267705 - 2267573
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| || |||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  2267705 ccattacattcattcttcctcgtcacacaaatcaatcggcttacccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 2267606  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  2267605 ccgctcctcctcaacctcgagtgattgtacacc 2267573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 13895006 - 13894875
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||| ||||||||||||||||||||||||| ||||| |||||||||||||||||||| ||||||||||||||||||||||||||    
T  13895006 ccattacattcattcttccttgtcacacaagtcaatcgggttgccc-ctacaatccctggggcaccttgtttttgttgaggaccaaaatagcatgtcctc 13894908  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||| ||||||| ||||    
T  13894907 ccgctcctcctcaacctcgaatgattgtacacc 13894875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 41579025 - 41579157
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| ||    
T  41579025 ccattacattcattcttcctcgtcacacaagtcaatcaggttgcccgctatagtcactggggcaccttgttttggttgaggaccaaaatagcatgtcttc 41579124  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | ||||||||||||||| || ||||||| ||||    
T  41579125 ccgctcctcctcaacctggactgattgtacacc 41579157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 80 - 200
Target Start/End: Original strand, 43478134 - 43478254
Alignment:
Q  80 attcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcc 179  Q
    |||||||| |||||||||||||||||||||||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||||||||| |||||    
T  43478134 attcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccctgcggcaccctgttttggttgaggaccaaaatagcatgtcctcccgctcc 43478233  T
Q  180 tcctcaacctcgagtgattgt 200  Q
    |||||||||||||||||||||    
T  43478234 tcctcaacctcgagtgattgt 43478254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 77 - 205
Target Start/End: Complemental strand, 49217845 - 49217717
Alignment:
Q  77 tacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgc 176  Q
    ||||||||||| |||||||||||||||| ||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||| ||    
T  49217845 tacattcattcatcctcgtcacacaagttaatcgggtttcccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcttcccgc 49217746  T
Q  177 tcctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||||||||||||||| ||||    
T  49217745 tcctcctcaacctcgagtgattgtacacc 49217717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 52568541 - 52568409
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||| ||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||| || ||||||||||||| |||    
T  52568541 ccattacattcattcttccttgtcacacaagtcaatcgtgttgcccactacagtccctggggcaccttgttttggttgatgatcaaaatagcatgtgctc 52568442  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  52568441 ccgctcctcctcaacctcgagtgattgtacacc 52568409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 54391441 - 54391573
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  54391441 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 54391540  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  54391541 ccgctcctcctcaacctcgagtgattgtacacc 54391573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 46406004 - 46406131
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  46406004 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 46406103  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||||||||||||||||||||    
T  46406104 ccgctcctcctcaacctcgagtgattgt 46406131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 74 - 205
Target Start/End: Complemental strand, 49139273 - 49139142
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    ||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| ||||||||||||||||    
T  49139273 cattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcc 49139174  T
Q  174 tgctcctcctcaacctcgagtgattgtgcacc 205  Q
     |||||||||||||||||||||||||| ||||    
T  49139173 cgctcctcctcaacctcgagtgattgtacacc 49139142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 55206042 - 55205916
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  55206042 ccattacattcat-cttcctcgtcacacaagtcaatcaggttgcccactacagtccctggggcaccttgttttggttgaggaccgaaatagcatgtcctc 55205944  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | |||||||||||||||||| |||||||    
T  55205943 ccgctcctcctcaacctcgaatgattgt 55205916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 49611260 - 49611386
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| | ||||||||||||||||||| |||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  49611260 cattcattcattctcgtcacacaagtcaatcaggtttcccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 49611359  T
Q  179 ctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||||||||||||| ||||    
T  49611360 ctcctcaacctcgagtgattgtacacc 49611386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 7247158 - 7247291
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagt-ccctggggcaccttgttttggttgaggaccaaaatagcatgtcct 171  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||||||||||    
T  7247158 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctatatttccctggggcaccttgttttggttgaggaccaaaatagcatgtcct 7247257  T
Q  172 cctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    |  ||||||||||||||| || ||||||| ||||    
T  7247258 ctcgctcctcctcaacctggactgattgtacacc 7247291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 4003374 - 4003242
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||| |||||| |||| |||||||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||||||||     
T  4003374 ccattacattcattcttcgtcgtcagacaaatcaatcgggttgcccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctt 4003275  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  4003274 ccgctcctcctcaacctcgagtgattgtacacc 4003242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 34050726 - 34050858
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| ||||| |||||||||    
T  34050726 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgtggtaccttgttttggttgaggaccgaaataacatgtcctc 34050825  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  34050826 ccgctcctcctcaacctcgagtgattgtacacc 34050858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 36136014 - 36136145
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||  || ||||||||||||||||||||| |||||||||||||||    
T  36136014 ccattacattcattcttcctcgtcacacaaatcaatcgggttgcccgctac-gtcccttcggtaccttgttttggttgaggaccgaaatagcatgtcctc 36136112  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  36136113 ccgctcctcctcaacctcgagtgattgtacacc 36136145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 51694656 - 51694524
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||| | ||||||||||||||| |||| |||||||||||||||||    
T  51694656 ccattacattcattcatcctcgtcacacaagtcaattgggtttcccgctacagtccctgcgacaccttgttttggtttaggaacaaaatagcatgtcctc 51694557  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  51694556 ccgctcctcctcaacctcgagtgattgtacacc 51694524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 2646096 - 2645969
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  2646096 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 2645997  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||||||||| ||||||||||    
T  2645996 ccgctcctcctcaaccttgagtgattgt 2645969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 46345707 - 46345575
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||    
T  46345707 ccattacattcattattcctcgtcacacaagtcaatcgagttgcccgctacagtccatggggcaccttgtttttgttgaggaccgaaatagcatgtcctc 46345608  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | ||| ||||||||||| || ||||||| ||||    
T  46345607 ccgctgctcctcaacctggactgattgtacacc 46345575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 34646310 - 34646191
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||| | || ||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||  ||||||||||    
T  34646310 tcttcctcgtcacaaaggttaatcgggttgcccgctacagtccctagggcaccttcttttggttgaggaccaaaatagcatgtcctcccactcctcctca 34646211  T
Q  186 acctcgagtgattgtgcacc 205  Q
    ||||||| ||||||| ||||    
T  34646210 acctcgattgattgtacacc 34646191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 3494244 - 3494117
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||| || ||||| || ||| |||||| |||||||| || ||||||||||||||||||||| |||||||||||||||    
T  3494244 ccattacattcattcttcctcgtcacataaatcaattggcttgtccgctatagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 3494145  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||| |||||| |||||||||    
T  3494144 ccgctcctcctgaacctccagtgattgt 3494117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 11378070 - 11377958
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | ||||||||| ||||||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  11378070 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 11377971  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  11377970 acctcgaatgatt 11377958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 49274547 - 49274659
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||| |||||||||||| |||||| || | |||||||||||| |||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  49274547 tcttcctcgtaacacaagtcaattgggttgtcctcgacagtccctgggacacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 49274646  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  49274647 acctcgaatgatt 49274659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 50458355 - 50458227
Alignment:
Q  73 ccattacattcattc---ttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtc 169  Q
    |||||||||||||||   ||||||  ||||||||||||| |||||| || | ||||||||||||||||||  |||||| |||||||||||||||||||||    
T  50458355 ccattacattcattcatcttcctcaccacacaagtcaattgggttgtcctcgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtc 50458256  T
Q  170 ctcctgctcctcctcaacctcgagtgatt 198  Q
    |||| |||| ||||||||||||| |||||    
T  50458255 ctcccgctcttcctcaacctcgaatgatt 50458227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 34471150 - 34471038
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||  || | ||||||||| ||||||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  34471150 tcttcctcatcacacaagtcaattgggttttcctcgacagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 34471051  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  34471050 acctcgaatgatt 34471038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 44928588 - 44928700
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||| ||||| |||||| || | ||||||||||||| ||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  44928588 tcttcctcatcacacaattcaattgggttgtcctcgacagtccctggggaacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 44928687  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  44928688 acctcgaatgatt 44928700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 88 - 198
Target Start/End: Complemental strand, 51012373 - 51012263
Alignment:
Q  88 ttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaac 187  Q
    |||||| |||||||||||||| |||||| ||   ||||| ||||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||    
T  51012373 ttcctcatcacacaagtcaattgggttgtccttgacagttcctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaac 51012274  T
Q  188 ctcgagtgatt 198  Q
    ||||| |||||    
T  51012273 ctcgaatgatt 51012263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 88 - 205
Target Start/End: Complemental strand, 27096777 - 27096660
Alignment:
Q  88 ttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaac 187  Q
    ||||||||||||||||||||| |||||| || | |||||  |||||||||||  |||||||||||  ||||||||||||||||||| |||||||||||||    
T  27096777 ttcctcgtcacacaagtcaattgggttgtcctcgacagtttctggggcacctgcttttggttgagagccaaaatagcatgtcctcccgctcctcctcaac 27096678  T
Q  188 ctcgagtgattgtgcacc 205  Q
    || || ||||||| ||||    
T  27096677 ctagaatgattgtacacc 27096660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 205
Target Start/End: Complemental strand, 20375065 - 20374947
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||| ||||||||||||||||||||  |||||| |||| ||| |  |||||||||| ||||||||||||||||||||| |||||||||||    
T  20375065 tcttcctcgtcacataagtcaatcgggttgcccgcggcagtccttggg-cacttgcttttggttgatgaccaaaatagcatgtcctcccgctcctcctca 20374967  T
Q  186 acctcgagtgattgtgcacc 205  Q
    || | || ||||||| ||||    
T  20374966 acttggaatgattgtacacc 20374947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 86 - 205
Target Start/End: Original strand, 27188201 - 27188320
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||||||| |||| || |||||||||||| ||  |  ||||  ||||||| |||||||||||||||||| |||||||||||    
T  27188201 tcttcctcatcacacaagtcaatcgggatgcctgcgacagtccctgggacatttgcttttaattgaggagcaaaatagcatgtcctcccgctcctcctca 27188300  T
Q  186 acctcgagtgattgtgcacc 205  Q
    ||||||| ||||||| ||||    
T  27188301 acctcgactgattgtacacc 27188320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 97 - 198
Target Start/End: Original strand, 14632606 - 14632707
Alignment:
Q  97 acacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcgagtga 196  Q
    |||||||||||| |||| | || | ||||||||| ||||||||  |||||| ||||||||||||||||||||||||| |||||||||||||||||| |||    
T  14632606 acacaagtcaattgggtcgtcctcgacagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgaatga 14632705  T
Q  197 tt 198  Q
    ||    
T  14632706 tt 14632707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 51016416 - 51016528
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| |  | ||||||| ||||||||||  |||||| ||||||||||||||||||||||| ||| | |||||||    
T  51016416 tcttcctcatcacacaagtcaattgggttgtcttcgacagtccatggggcacctgcttttggctgaggaccaaaatagcatgtccttctgtttctcctca 51016515  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  51016516 acctcgaatgatt 51016528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 124 - 200
Target Start/End: Complemental strand, 3497887 - 3497811
Alignment:
Q  124 agtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcgagtgattgt 200  Q
    |||||||| || ||||||||||||||||||||| |||||||||||||||| ||||||||| |||||| |||||||||    
T  3497887 agtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctcccgctcctcctgaacctccagtgattgt 3497811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 197
Target Start/End: Original strand, 30193663 - 30193774
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| |  | ||||||| ||||||||||  |||||  |||||||||||| | ||||||| || |||||||||||    
T  30193663 tcttcctcatcacacaagtcaattgggttgtcttcgacagtccatggggcacctgtttttgactgaggaccaaaacaacatgtccacccgctcctcctca 30193762  T
Q  186 acctcgagtgat 197  Q
    ||||||| ||||    
T  30193763 acctcgaatgat 30193774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 10052445 - 10052334
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||| | |||||||||||||| |||||| || | ||| ||| ||||||||||  |||||| | ||||| || |||||||||||||| |||||||||||    
T  10052445 tcttccgcatcacacaagtcaattgggttgtcctcgacaatccatggggcacctgcttttggctaaggac-aatatagcatgtcctcccgctcctcctca 10052347  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  10052346 acctcgaatgatt 10052334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 46413378 - 46413265
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccct-ggggcaccttg-ttttggttgaggaccaaaatagcatgtcctcctgctcctcct 183  Q
    |||||||| |||||||||||||| |||||| || | | ||||||| |||||||| || |||||| |||||| | ||||| |||||||||| ||||||||     
T  46413378 tcttcctcatcacacaagtcaattgggttgtcctcgatagtccctgggggcaccctgcttttggctgaggatc-aaatatcatgtcctcccgctcctccg 46413280  T
Q  184 caacctcgagtgatt 198  Q
    ||||||||| |||||    
T  46413279 caacctcgaatgatt 46413265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 24701393 - 24701353
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggtt 114  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  24701393 cattacattcattcatcctcgtcacacaagtcaatcgggtt 24701353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 50341531 - 50341432
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||| ||||||||||||||| || ||| || | ||||||||| ||||||||  |||||||| ||||   ||||| |||||||| | |||||||||||    
T  50341531 tcttccttgtcacacaagtcaattggattgtcctcgacagtccctagggcacctgcttttggtttaggatagaaataacatgtccttccgctcctcctca 50341432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 94 - 138
Target Start/End: Complemental strand, 42322454 - 42322410
Alignment:
Q  94 gtcacacaagtcaatcgggttgcccgctacagtccctggggcacc 138  Q
    |||||||||||||||||||||| || | ||||||| |||||||||    
T  42322454 gtcacacaagtcaatcgggttgtcctcgacagtccttggggcacc 42322410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 113; Significance: 3e-57; HSPs: 38)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 35525295 - 35525164
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  35525295 ccattacattcattcttcctcgtcacacaagtcaatcgg-ttgcccgctacattccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 35525197  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  35525196 ccgctcctcctcaacctcgagtgattgtacacc 35525164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 74 - 200
Target Start/End: Complemental strand, 42570889 - 42570763
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  42570889 cattacattcattcttcctcgtcacacaagtcaatcgggttgccctctacagtccctgaggcaccttgttttggttgaggaccaaaatagcatgtcctcc 42570790  T
Q  174 tgctcctcctcaacctcgagtgattgt 200  Q
     |||||||||||||||||| |||||||    
T  42570789 cgctcctcctcaacctcgactgattgt 42570763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 13974033 - 13974165
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  13974033 ccattacattcattcttcctcgtcacacaagttaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaacaaaatagcatgtcctc 13974132  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    |  |||||||||||||| |||||||||| ||||    
T  13974133 catctcctcctcaacctggagtgattgtacacc 13974165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 73 - 206
Target Start/End: Complemental strand, 27485821 - 27485689
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||| ||||||||||||||||||||||||||  |||||||||||| || ||||||||||||||||||||||||||||||||||||||||    
T  27485821 ccattacattcattcatcctcgtcacacaagtcaatcgggttttccgctacagtcc-tgcggcaccttgttttggttgaggaccaaaatagcatgtcctc 27485723  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacct 206  Q
    |||||||||||||||||||||||||||| |||||    
T  27485722 ctgctcctcctcaacctcgagtgattgtacacct 27485689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 29437041 - 29437172
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||    
T  29437041 ccattacattcattcttcttcgtcacacaagtcaatcgggttgcccgctacagtccctggg-caccttgttttggttgaggaccaaaataacatgtcctc 29437139  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | ||||||||||||| |||||||||||| ||||    
T  29437140 ccgctcctcctcaacttcgagtgattgtacacc 29437172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 41803333 - 41803465
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| |||||||||    
T  41803333 ccattacattcattcttccttgtcacacaagtcaatcgggttgcccgctacagtccttgggacaccttgttttggttgaggaccaaaataacatgtcctc 41803432  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||| ||||||| ||||    
T  41803433 ccgctcctcctcaacctcgactgattgtacacc 41803465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 189
Target Start/End: Complemental strand, 46142554 - 46142438
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  46142554 ccattacattcattcttcctcatcacacaagtcaatcgggttgcccgctacagtcccaggggcaccttgttttggttgaggaccaaaatagcatgtcctc 46142455  T
Q  173 ctgctcctcctcaacct 189  Q
    | |||||||||||||||    
T  46142454 ccgctcctcctcaacct 46142438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 49925548 - 49925416
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| ||||| |||||||||    
T  49925548 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctaaggcaccttgttttggttgaggaccgaaataacatgtcctc 49925449  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | ||||||| |||||||||||||||||| ||||    
T  49925448 ccgctcctcgtcaacctcgagtgattgtacacc 49925416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 18974418 - 18974533
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  18974418 ccattacattcattcttcctcgtcacacaagtcaatcgggttgtccgctacagtccctggggcaccttgttttggttgaggaccgaaatagcatgtcctc 18974517  T
Q  173 ctgctcctcctcaacc 188  Q
    | ||||||||||||||    
T  18974518 ccgctcctcctcaacc 18974533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 104; E-Value: 6e-52
Query Start/End: Original strand, 73 - 200
Target Start/End: Original strand, 48227618 - 48227745
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  48227618 ccattacattcattcttcctcgtcacacaaatcaatcgggttgcccgctacagtccctgcggtaccttgttttggttgaggaccaaaatagcatgtcctc 48227717  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
      ||||||||||||||||||| ||||||    
T  48227718 tcgctcctcctcaacctcgagcgattgt 48227745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 79 - 205
Target Start/End: Original strand, 51270916 - 51271042
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  51270916 cattcattcatcctcgtcacacaagtcaatcgggtttcccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 51271015  T
Q  179 ctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||||||||| ||| ||||    
T  51271016 ctcctcaacctcgagtgaatgtacacc 51271042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 73 - 206
Target Start/End: Original strand, 26494565 - 26494698
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||    
T  26494565 ccattacattcagtcttcctcgtcatacaagtcaatcgggttgcccgctacagtccctggagcaccttcttttggttgaggaccaaaatagcatgtcctc 26494664  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacct 206  Q
    | ||||||||||||| |||| ||||||| |||||    
T  26494665 ccgctcctcctcaacttcgactgattgtacacct 26494698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 29761273 - 29761152
Alignment:
Q  79 cattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctc 178  Q
    ||||||||| ||||||||||||||| |||||||| | |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||    
T  29761273 cattcattcatcctcgtcacacaagccaatcgggattcccgctacagtccctgcggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctc 29761174  T
Q  179 ctcctcaacctcgagtgattgt 200  Q
    ||||||||||||||||||||||    
T  29761173 ctcctcaacctcgagtgattgt 29761152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 49428446 - 49428578
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||| ||||||||||||||||||||||| |||| |||||||||| |||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  49428446 ccattatattcattcttcctcgtcacacaaatcaaccgggttgcccactacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 49428545  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||||||||||||||||||||||||| ||||    
T  49428546 ccgctcctcctcaacctcgagtgattgtacacc 49428578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 13634518 - 13634391
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||||||||||||||||||| |||||||||||||||    
T  13634518 ccattacattcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttgttttggttgaggaccgaaatagcatgtcctc 13634419  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||| ||||||||||||||||||||||    
T  13634418 ccgctactcctcaacctcgagtgattgt 13634391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 80 - 205
Target Start/End: Original strand, 36910995 - 36911119
Alignment:
Q  80 attcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcc 179  Q
    ||||||||||||||||| |||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  36910995 attcattcttcctcgtcgcacaagtcaaccgggttgcc-gctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcc 36911093  T
Q  180 tcctcaacctcgagtgattgtgcacc 205  Q
    | ||||||||||| ||||||| ||||    
T  36911094 ttctcaacctcgactgattgtacacc 36911119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 24363166 - 24363034
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    ||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||| ||||||| ||||||||||||||||||||||||| |||||    
T  24363166 ccattacattcattcttcctcgtcacacaagtcaatcaggttgcccactacagtccctggagcaccttcttttggttgaggaccaaaatagcatatcctc 24363067  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    |  ||||||||||||| ||| ||||||| ||||    
T  24363066 ccactcctcctcaaccccgactgattgtacacc 24363034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 205
Target Start/End: Original strand, 49397753 - 49397885
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||| || ||||||||||| ||||||||    
T  49397753 ccattacattcattcttcatcgtcacacaagtcaatcgggttgcccgctacagtccttggggcaccgtgttttggtcgatgaccaaaatagtatgtcctc 49397852  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | |||| ||||||||||||| ||||||| ||||    
T  49397853 ccgctcatcctcaacctcgactgattgtacacc 49397885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 92 - 186
Target Start/End: Original strand, 6436846 - 6436940
Alignment:
Q  92 tcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaa 186  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  6436846 tcgtcacacaagtcaatcgggttgcccgctacaatccctggggcaccatgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaa 6436940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 23343637 - 23343749
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | ||| ||||||||||||||  |||||||||||||||||||||||||||||||| |||||||||||    
T  23343637 tcttcctcatcacacaagtcaattgggttgtcctcgacaatccctggggcacctgcttttggttgaggaccaaaatagcatgtcctcccgctcctcctca 23343736  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  23343737 acctcgaatgatt 23343749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 35585992 - 35585880
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | ||||||||||||||||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  35585992 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 35585893  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  35585892 acctcgaatgatt 35585880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 37779266 - 37779378
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | ||||||||||||||||||  |||||| |||||||||||||||||||||||||  ||||||||||    
T  37779266 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcccactcctcctca 37779365  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  37779366 acctcgaatgatt 37779378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 39856333 - 39856221
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||  |  | ||||||||||||||||||  |||||| |||||||||||||||||||||||||||||||||||||    
T  39856333 tcttcctcatcacacaagtcaattgggttttcttcgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcctgctcctcctca 39856234  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  39856233 acctcgaatgatt 39856221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 116 - 205
Target Start/End: Complemental strand, 44336974 - 44336885
Alignment:
Q  116 cccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||| ||| ||| |||||||||||||||||| ||||    
T  44336974 cccgctacagtccctgcggcaccttgatttggttgaggaccaaaatagcatgtcctcccgcttctcttcaacctcgagtgattgtacacc 44336885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 15355874 - 15355762
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | | ||||||||||| ||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  15355874 tcttcctcatcacacaagtcaattgggttgtcctcgatagtccctggggtacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 15355775  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  15355774 acctcgaatgatt 15355762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 17685419 - 17685308
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| ||||||  | | ||||||||| ||||||||  |||||| ||||||||||||||||||||||||| |||||||||||    
T  17685419 tcttcctcatcacacaagtcaattgggttgtactcgacagtccctagggcacctgcttttggctgaggaccaaaatagcatgtcctcccgctcctcctca 17685320  T
Q  186 acctcgagtgat 197  Q
    ||||||| ||||    
T  17685319 acctcgaatgat 17685308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 205
Target Start/End: Complemental strand, 26634249 - 26634175
Alignment:
Q  131 ggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  26634249 ggggcaccttgttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacacc 26634175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 198
Target Start/End: Complemental strand, 38044294 - 38044182
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| ||||||| |||||| |||||| |  | |||||||||| |||||||  |||||||||||||| ||||||||||||||||| |||||||||||    
T  38044294 tcttcctcatcacacaggtcaattgggttgtcgtcgacagtccctgaggcacctgcttttggttgaggacaaaaatagcatgtcctcccgctcctcctca 38044195  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  38044194 acctcgaatgatt 38044182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 130 - 205
Target Start/End: Complemental strand, 14172802 - 14172727
Alignment:
Q  130 tggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||| ||||    
T  14172802 tggggcaccttcttttggttgaggaccaaaatagcatgtcctcccgctcctcctcaacctcgactgattgtacacc 14172727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 86 - 192
Target Start/End: Complemental strand, 49260769 - 49260663
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | ||||||||||||| ||||  |||||| ||||||||||||||||||||||| | |||| ||||||    
T  49260769 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggggtacctgcttttggctgaggaccaaaatagcatgtccttccgctcatcctca 49260670  T
Q  186 acctcga 192  Q
    |||||||    
T  49260669 acctcga 49260663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 73 - 181
Target Start/End: Original strand, 13284564 - 13284675
Alignment:
Q  73 ccattacattcattc---ttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtc 169  Q
    |||||||||||||||   |||||| |||||||| ||||||||||||||||||||||||||| |||||| |  ||||  ||||||||||||||||||||||    
T  13284564 ccattacattcattcatcttcctcatcacacaaatcaatcgggttgcccgctacagtcccttgggcacttgcttttcattgaggaccaaaatagcatgtc 13284663  T
Q  170 ctcctgctcctc 181  Q
    |||  |||||||    
T  13284664 ctctcgctcctc 13284675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 35186121 - 35186233
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| | |||||||||||| |||||| || | |||||||||||||||| |  |||||| |||| ||||||||||||||| |||| |||||||||||    
T  35186121 tcttcctcatgacacaagtcaattgggttgtcctcgacagtccctggggcacttgcttttggctgagaaccaaaatagcatgttctcccgctcctcctca 35186220  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  35186221 acctcgaatgatt 35186233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 86 - 197
Target Start/End: Complemental strand, 24269457 - 24269346
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| | | || || | ||||||||| ||||||||  ||||||  |||||||||||||||||||||||| |||||||||||    
T  24269457 tcttcctcatcacacaagtcaattgagctgtcctcgacagtccctagggcacctgcttttggccgaggaccaaaatagcatgtcctcccgctcctcctca 24269358  T
Q  186 acctcgagtgat 197  Q
    ||||||| ||||    
T  24269357 acctcgaatgat 24269346  T

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Target: chr1; HSP #34
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 92 - 173
Target Start/End: Complemental strand, 12790354 - 12790273
Alignment:
Q  92 tcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||| ||||||||||| || | ||||||||||||||||||  |||||| |||||||||||||||||||||||||    
T  12790354 tcgtcacacaaggcaatcgggttgtcctcgacagtccctggggcacctgcttttggctgaggaccaaaatagcatgtcctcc 12790273  T

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Target: chr1; HSP #35
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 187
Target Start/End: Complemental strand, 40532461 - 40532366
Alignment:
Q  92 tcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctcaac 187  Q
    ||||||||||||||||||| |||| || | || ||||||| |||||||  |||||| ||||||| ||||||||||||||||| |||||||||||||    
T  40532461 tcgtcacacaagtcaatcgagttgtcctcgacggtccctgaggcacctgcttttggctgaggacaaaaatagcatgtcctcccgctcctcctcaac 40532366  T

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Target: chr1; HSP #36
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 86 - 170
Target Start/End: Complemental strand, 31451543 - 31451459
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcc 170  Q
    ||||||| ||||||||||||||| |||||| || | |||||||| ||||||| |  |||||||||||||||||||||||||||||    
T  31451543 tcttccttgtcacacaagtcaattgggttgtcctcaacagtccccggggcacttgcttttggttgaggaccaaaatagcatgtcc 31451459  T

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Target: chr1; HSP #37
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 14771861 - 14771762
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||||||||||||||||||| |||||  || | | | ||| ||||||||||  ||||||||||| ||||||||| |||||||||| |||||||||||    
T  14771861 tcttcctcgtcacacaagtcaattgggttatcctcgatattccttggggcacctgcttttggttgagaaccaaaatatcatgtcctcccgctcctcctca 14771762  T

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Target: chr1; HSP #38
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 86 - 185
Target Start/End: Complemental strand, 16531280 - 16531181
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||||||||  || ||||| |||||| || | ||||||| ||||||||||  ||||||||||||| ||||||||||||||||||  ||||||||||    
T  16531280 tcttcctcgtcactgaactcaattgggttgtcctcgacagtccttggggcacctgcttttggttgaggatcaaaatagcatgtcctcccactcctcctca 16531181  T

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Target: scaffold0176 (Bit Score: 107; Significance: 1e-53; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 74 - 200
Target Start/End: Original strand, 2884 - 3010
Alignment:
Q  74 cattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcc 173  Q
    |||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||    
T  2884 cattacattcattcctcctcgtcacacaagtcaatcgggtttcccgctacagtccctgtggcaccttgttttggttgaggaccaaaatagcatgtcatcc 2983  T
Q  174 tgctcctcctcaacctcgagtgattgt 200  Q
     ||||||||||||||||||||||||||    
T  2984 cgctcctcctcaacctcgagtgattgt 3010  T

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Target: scaffold0618 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 73 - 205
Target Start/End: Complemental strand, 4661 - 4529
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||    
T  4661 ccattacattcattattcctcgtcacacaagtcaatcgagttgcccgctacagtccatggggcaccttgtttttgttgaggaccgaaatagcatgtcctc 4562  T
Q  173 ctgctcctcctcaacctcgagtgattgtgcacc 205  Q
    | ||| ||||||||||| || ||||||| ||||    
T  4561 ccgctgctcctcaacctggactgattgtacacc 4529  T

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Target: scaffold0494 (Bit Score: 88; Significance: 2e-42; HSPs: 1)
Name: scaffold0494
Description:

Target: scaffold0494; HSP #1
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 73 - 200
Target Start/End: Complemental strand, 5944 - 5817
Alignment:
Q  73 ccattacattcattcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctc 172  Q
    |||||||  ||||||||||||||||||||| |||||||| ||| ||||||||||||||| || ||||| ||||||||||||||| |||||||||||||||    
T  5944 ccattactgtcattcttcctcgtcacacaaatcaatcggcttgtccgctacagtccctgcggtaccttcttttggttgaggacctaaatagcatgtcctc 5845  T
Q  173 ctgctcctcctcaacctcgagtgattgt 200  Q
    | ||||||||||||||||||||||||||    
T  5844 ccgctcctcctcaacctcgagtgattgt 5817  T

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Target: scaffold0589 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: scaffold0589
Description:

Target: scaffold0589; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 5420 - 5532
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    |||||||| |||||||||||||| |||||| || | |||||||||||||||||| ||||||| |||||||||||||||||||||||||  |||||||| |    
T  5420 tcttcctcatcacacaagtcaattgggttgtcctcgacagtccctggggcacctggttttggctgaggaccaaaatagcatgtcctcccactcctcctta 5519  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  5520 acctcgaatgatt 5532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0859 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0859
Description:

Target: scaffold0859; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 86 - 198
Target Start/End: Original strand, 1456 - 1568
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcctca 185  Q
    ||||||||||||||||||||||| |||||| || | |||||||||| |||||||| |||||||||||||   ||||||||||| | || |||||||||||    
T  1456 tcttcctcgtcacacaagtcaattgggttgtcctcgacagtccctgaggcaccttcttttggttgaggatagaaatagcatgttcacccgctcctcctca 1555  T
Q  186 acctcgagtgatt 198  Q
    ||||||| |||||    
T  1556 acctcgattgatt 1568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0258 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: scaffold0258
Description:

Target: scaffold0258; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 86 - 183
Target Start/End: Original strand, 9610 - 9707
Alignment:
Q  86 tcttcctcgtcacacaagtcaatcgggttgcccgctacagtccctggggcaccttgttttggttgaggaccaaaatagcatgtcctcctgctcctcct 183  Q
    |||||||| ||||| |||||||| |||||| || | | ||||||| |||||| |  ||||||||||||||||||||| |||||||| | |||||||||    
T  9610 tcttcctcttcacataagtcaattgggttgtcctcgatagtccctagggcacatgattttggttgaggaccaaaataacatgtccttccgctcctcct 9707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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