View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_high_71 (Length: 251)

Name: NF0821_high_71
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_high_71
NF0821_high_71
[»] chr3 (9 HSPs)
chr3 (26-68)||(17131954-17131996)
chr3 (28-68)||(12033236-12033276)
chr3 (28-68)||(14866069-14866109)
chr3 (28-68)||(51301815-51301855)
chr3 (28-68)||(10389230-10389270)
chr3 (28-68)||(10414320-10414360)
chr3 (28-68)||(10420990-10421030)
chr3 (28-68)||(10555532-10555572)
chr3 (28-68)||(19234864-19234904)
[»] scaffold1318 (1 HSPs)
scaffold1318 (28-68)||(1704-1744)
[»] scaffold0026 (1 HSPs)
scaffold0026 (28-68)||(111912-111952)
[»] scaffold0023 (1 HSPs)
scaffold0023 (28-68)||(135662-135702)
[»] chr7 (6 HSPs)
chr7 (28-68)||(14319410-14319450)
chr7 (28-68)||(20906252-20906292)
chr7 (28-66)||(14231005-14231043)
chr7 (28-63)||(2971478-2971513)
chr7 (28-63)||(16091299-16091334)
chr7 (28-63)||(29180904-29180939)
[»] chr6 (6 HSPs)
chr6 (28-68)||(24641472-24641512)
chr6 (28-68)||(20007738-20007778)
chr6 (28-68)||(11288461-11288501)
chr6 (28-68)||(9098867-9098907)
chr6 (28-68)||(15458715-15458755)
chr6 (28-68)||(15465310-15465350)
[»] chr2 (5 HSPs)
chr2 (28-68)||(23168080-23168120)
chr2 (28-68)||(23579337-23579377)
chr2 (28-68)||(25180733-25180773)
chr2 (28-68)||(26885414-26885454)
chr2 (28-68)||(27207499-27207539)
[»] scaffold0720 (1 HSPs)
scaffold0720 (28-66)||(3195-3233)
[»] scaffold0348 (1 HSPs)
scaffold0348 (30-68)||(9567-9605)
[»] chr1 (5 HSPs)
chr1 (29-67)||(21706502-21706540)
chr1 (29-67)||(21711044-21711082)
chr1 (28-68)||(20850924-20850964)
chr1 (28-68)||(20857551-20857591)
chr1 (33-68)||(19965342-19965377)
[»] scaffold0098 (1 HSPs)
scaffold0098 (28-68)||(37-77)
[»] scaffold0039 (1 HSPs)
scaffold0039 (28-68)||(6-46)
[»] scaffold0001 (1 HSPs)
scaffold0001 (28-68)||(492812-492852)
[»] chr8 (1 HSPs)
chr8 (28-68)||(24320462-24320502)
[»] chr5 (5 HSPs)
chr5 (28-68)||(22461379-22461419)
chr5 (28-68)||(22468003-22468043)
chr5 (28-67)||(19237123-19237162)
chr5 (28-68)||(20773188-20773228)
chr5 (28-68)||(20781963-20782003)
[»] scaffold1461 (1 HSPs)
scaffold1461 (33-68)||(1267-1302)
[»] scaffold0072 (1 HSPs)
scaffold0072 (28-63)||(49766-49801)
[»] scaffold0053 (1 HSPs)
scaffold0053 (28-63)||(79286-79321)
[»] chr4 (2 HSPs)
chr4 (31-68)||(1649997-1650034)
chr4 (26-63)||(16146655-16146692)
[»] scaffold0483 (1 HSPs)
scaffold0483 (33-68)||(10804-10839)
[»] scaffold1419 (1 HSPs)
scaffold1419 (28-68)||(1739-1779)
[»] scaffold0249 (1 HSPs)
scaffold0249 (28-68)||(13684-13724)
[»] scaffold0183 (1 HSPs)
scaffold0183 (28-68)||(224-264)


Alignment Details
Target: chr3 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 26 - 68
Target Start/End: Original strand, 17131954 - 17131996
Alignment:
Q  26 atctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  17131954 atctcccttattactattaatttctaattattccccaacctcc 17131996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 12033276 - 12033236
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  12033276 ctcccttattactattaatttctaattattccccaacctcc 12033236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 14866069 - 14866109
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  14866069 ctcccttattactattaatttctaattattccccaaactcc 14866109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 51301815 - 51301855
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  51301815 ctcccttattactattaatttctaattattcctcaacctcc 51301855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 10389270 - 10389230
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  10389270 ctcccttattactattaatttctaattaatccctaacctcc 10389230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 10414360 - 10414320
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  10414360 ctcccttattactattaatttctaattaatccctaacctcc 10414320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 10421030 - 10420990
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||| |||| |||||||    
T  10421030 ctcccttattactattaatttctaattaatccctaacctcc 10420990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 10555532 - 10555572
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  10555532 ctcccttattattattaatttctaattaatccccaacctcc 10555572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 19234904 - 19234864
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  19234904 ctcccttattattattaatttctaattaatccctaacctcc 19234864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1318 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold1318
Description:

Target: scaffold1318; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 1744 - 1704
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  1744 ctcccttattactattaatttctaattattccccaacctcc 1704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 111912 - 111952
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  111912 ctcccttattactattaatttctaattattccccaacctcc 111952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 135662 - 135702
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  135662 ctcccttattactattaatttctaattattccccaacctcc 135702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 14319450 - 14319410
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  14319450 ctcccttattactattaatttctaattattccccaacctcc 14319410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 20906292 - 20906252
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  20906292 ctcccttattactattaatttctaattattccccaacctcc 20906252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 66
Target Start/End: Original strand, 14231005 - 14231043
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacct 66  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14231005 ctcccttattactattaatttctaattattccccaacct 14231043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 2971478 - 2971513
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaa 63  Q
    ||||||||||||||||||||||||||||||||||||    
T  2971478 ctcccttattactattaatttctaattattccccaa 2971513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 63
Target Start/End: Original strand, 16091299 - 16091334
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaa 63  Q
    ||||||||||||||||||||||||||||||||||||    
T  16091299 ctcccttattactattaatttctaattattccccaa 16091334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 29180939 - 29180904
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaa 63  Q
    ||||||||||||||||||||||||||||||||||||    
T  29180939 ctcccttattactattaatttctaattattccccaa 29180904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 24641512 - 24641472
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  24641512 ctcccttattactattaatttctaattattccccaacctcc 24641472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 20007778 - 20007738
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  20007778 ctcccttattactattaatttctaattactccccaacctcc 20007738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 11288501 - 11288461
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||| |||||||||||||||| ||||||||||||    
T  11288501 ctcccttattattattaatttctaattaatccccaacctcc 11288461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 9098907 - 9098867
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  9098907 ctcccttattattattaatttctaattaatccctaacctcc 9098867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 15458715 - 15458755
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  15458715 ctcccttattattattaatttctaattaatccctaacctcc 15458755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 15465310 - 15465350
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  15465310 ctcccttattattattaatttctaattaatccctaacctcc 15465350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 23168120 - 23168080
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23168120 ctcccttattactattaatttctaattattccccaacctcc 23168080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 23579377 - 23579337
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  23579377 ctcccttattactattaatttctaattattccccaacctcc 23579337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 25180773 - 25180733
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  25180773 ctcccttattactattaatttctaattattccccaacctcc 25180733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 26885414 - 26885454
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||||    
T  26885414 ctcccttattactattaatttctaattattccccaacctcc 26885454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 27207539 - 27207499
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||||||||||||| ||||||||||| |||||||    
T  27207539 ctcccttattactattaatttttaattattcccaaacctcc 27207499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0720 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0720
Description:

Target: scaffold0720; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 28 - 66
Target Start/End: Complemental strand, 3233 - 3195
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacct 66  Q
    |||||||||||||||||||||||||||||||||||||||    
T  3233 ctcccttattactattaatttctaattattccccaacct 3195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0348 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0348
Description:

Target: scaffold0348; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 30 - 68
Target Start/End: Original strand, 9567 - 9605
Alignment:
Q  30 cccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||||||    
T  9567 cccttattactattaatttctaattattccccaacctcc 9605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 21706502 - 21706540
Alignment:
Q  29 tcccttattactattaatttctaattattccccaacctc 67  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21706502 tcccttattactattaatttctaattattccccaacctc 21706540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 21711044 - 21711082
Alignment:
Q  29 tcccttattactattaatttctaattattccccaacctc 67  Q
    |||||||||||||||||||||||||||||||||||||||    
T  21711044 tcccttattactattaatttctaattattccccaacctc 21711082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 20850964 - 20850924
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  20850964 ctcccttattactattaatttctaattactccccaacctcc 20850924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 20857591 - 20857551
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  20857591 ctcccttattactattaatttctaattactccccaacctcc 20857551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Original strand, 19965342 - 19965377
Alignment:
Q  33 ttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||||||||||||||| ||||||||||||    
T  19965342 ttattactattaatttctaattactccccaacctcc 19965377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 37 - 77
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  37 ctcccttattactattaatttctaattattccccaaactcc 77  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 6 - 46
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  6 ctcccttattactattaatttctaattactccccaacctcc 46  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0001 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0001
Description:

Target: scaffold0001; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 492852 - 492812
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||||||||||| ||||    
T  492852 ctcccttattactattaatttctaattattccccaatctcc 492812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 24320502 - 24320462
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  24320502 ctcccttattactattaatttctaattactccccaacctcc 24320462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000006; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 22461379 - 22461419
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  22461379 ctcccttattactattaatttctaattactccccaacctcc 22461419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 22468003 - 22468043
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||| ||||||||||||    
T  22468003 ctcccttattactattaatttctaattactccccaacctcc 22468043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 28 - 67
Target Start/End: Original strand, 19237123 - 19237162
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctc 67  Q
    |||| ||||||||||||||||||||||| |||||||||||    
T  19237123 ctcctttattactattaatttctaattactccccaacctc 19237162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 20773188 - 20773228
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  20773188 ctcccttattattattaatttctaattaatccctaacctcc 20773228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 20781963 - 20782003
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  20781963 ctcccttattattattaatttctaattaatccctaacctcc 20782003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1461 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold1461
Description:

Target: scaffold1461; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 1302 - 1267
Alignment:
Q  33 ttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||||||||||||||||||||||||||||    
T  1302 ttattactattaatttctaattattccccaacctcc 1267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0072 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0072
Description:

Target: scaffold0072; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 49801 - 49766
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaa 63  Q
    ||||||||||||||||||||||||||||||||||||    
T  49801 ctcccttattactattaatttctaattattccccaa 49766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0053 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0053
Description:

Target: scaffold0053; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 28 - 63
Target Start/End: Complemental strand, 79321 - 79286
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaa 63  Q
    ||||||||||||||||||||||||||||||||||||    
T  79321 ctcccttattactattaatttctaattattccccaa 79286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 68
Target Start/End: Complemental strand, 1650034 - 1649997
Alignment:
Q  31 ccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  1650034 ccttattactattaattcctaattattccccaacctcc 1649997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 63
Target Start/End: Complemental strand, 16146692 - 16146655
Alignment:
Q  26 atctcccttattactattaatttctaattattccccaa 63  Q
    ||||| ||||||||||||||||| ||||||||||||||    
T  16146692 atctctcttattactattaatttttaattattccccaa 16146655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0483 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0483
Description:

Target: scaffold0483; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 33 - 68
Target Start/End: Complemental strand, 10839 - 10804
Alignment:
Q  33 ttattactattaatttctaattattccccaacctcc 68  Q
    |||||||||||||||||||||||||||| |||||||    
T  10839 ttattactattaatttctaattattccctaacctcc 10804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1419 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1419
Description:

Target: scaffold1419; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 1779 - 1739
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  1779 ctcccttattattattaatttctaattaatccctaacctcc 1739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0249 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0249
Description:

Target: scaffold0249; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Complemental strand, 13724 - 13684
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  13724 ctcccttattattattaatttctaattaatccctaacctcc 13684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0183 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0183
Description:

Target: scaffold0183; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 68
Target Start/End: Original strand, 224 - 264
Alignment:
Q  28 ctcccttattactattaatttctaattattccccaacctcc 68  Q
    ||||||||||| |||||||||||||||| |||| |||||||    
T  224 ctcccttattattattaatttctaattaatccctaacctcc 264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 7005 times since January 2019
Visitors: 5773