View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_high_72 (Length: 251)
Name: NF0821_high_72
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_high_72 |
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| [»] scaffold0640 (2 HSPs) |
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| [»] scaffold0271 (1 HSPs) |
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Alignment Details
Target: scaffold0640 (Bit Score: 169; Significance: 1e-90; HSPs: 2)
Name: scaffold0640
Description:
Target: scaffold0640; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 8839 - 8630
Alignment:
| Q |
15 |
gacaggttgctcaacactgacagttccaatgcagtgtcggtgccannnnnnn-catgggcaggagcgaacaggatttggttgttgcatcagtggaaggga |
113 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||||| |
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| T |
8839 |
gacaggttgctcaacactgacagttccaatgcagtgtcggtgccagtttttttcatgggcaggagcgaacaagatttggttgttacatctgtggaaggga |
8740 |
T |
|
| Q |
114 |
aggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtgcatggaggagaagaaatcgcttttgttgactgccatgaattataggtg |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8739 |
aggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtgcatggaggagaagaaatcgcttttgttgactgccatgaattataggtg |
8640 |
T |
|
| Q |
214 |
catgagatgg |
223 |
Q |
| |
|
|||||||||| |
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|
| T |
8639 |
catgagatgg |
8630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0640; HSP #2
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 15 - 178
Target Start/End: Complemental strand, 2193 - 2030
Alignment:
| Q |
15 |
gacaggttgctcaacactgacagttccaatgcagtgtcggtgccannnnnnncatgggcaggagcgaacaggatttggttgttgcatcagtggaagggaa |
114 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||| | |||||||||| ||||||||||| ||||||||| ||||||||||| |
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| T |
2193 |
gacaggttgctcaacactgacaattccaatgcagtgtccgtgccagttttttcgtgggcaggagtcgacaggatttggctgttgcatccgtggaagggaa |
2094 |
T |
|
| Q |
115 |
ggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtgcatggaggagaag |
178 |
Q |
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|| ||||||||||||| ||||||| |||||||||||||||||||| ||| |||||| ||||| |
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|
| T |
2093 |
ggcaaatttgttagatcccttacagactggtcatggtctgaattggaggtgtatggagaagaag |
2030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 169; Significance: 1e-90; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 33324189 - 33324398
Alignment:
| Q |
15 |
gacaggttgctcaacactgacagttccaatgcagtgtcggtgccannnnnnn-catgggcaggagcgaacaggatttggttgttgcatcagtggaaggga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||||| |
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| T |
33324189 |
gacaggttgctcaacactgacagttccaatgcagtgtcggtgccagtttttttcatgggcaggagcgaacaagatttggttgttacatctgtggaaggga |
33324288 |
T |
|
| Q |
114 |
aggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtgcatggaggagaagaaatcgcttttgttgactgccatgaattataggtg |
213 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
33324289 |
aggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtgcatggaggagaagaaatcgcttttgttgactgccatgaattataggtg |
33324388 |
T |
|
| Q |
214 |
catgagatgg |
223 |
Q |
| |
|
|||||||||| |
|
|
| T |
33324389 |
catgagatgg |
33324398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 169; Significance: 1e-90; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 1042598 - 1042807
Alignment:
| Q |
15 |
gacaggttgctcaacactgacagttccaatgcagtgtcggtgccannnnnnn-catgggcaggagcgaacaggatttggttgttgcatcagtggaaggga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||| |||| |||||||||| |
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| T |
1042598 |
gacaggttgctcaacactgacagttccaatgcagtgtcggtgccagtttttttcatgggcaggagcgaacaagatttggttgttacatctgtggaaggga |
1042697 |
T |
|
| Q |
114 |
aggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtgcatggaggagaagaaatcgcttttgttgactgccatgaattataggtg |
213 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1042698 |
aggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtgcatggaggagaagaaatcgcttttgttgactgccatgaattataggtg |
1042797 |
T |
|
| Q |
214 |
catgagatgg |
223 |
Q |
| |
|
|||||||||| |
|
|
| T |
1042798 |
catgagatgg |
1042807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 41193670 - 41193876
Alignment:
| Q |
15 |
gacaggttgctcaacactgacagttccaatgcagtgtcggtgccannnnnnn-catgggcaggagcgaacaggatttggttgttgcatcagtggaaggga |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||| |||||||||| |
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| T |
41193670 |
gacaggttgctcaacactgacagttccaatgcagtgtcggtgccagtttttttcatgggcaggagcgaacaggatttgtttgttgcatccgtggaaggga |
41193769 |
T |
|
| Q |
114 |
aggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtgcatggaggagaagaaatcgcttttgttgactgccatgaattataggtg |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| | |||| |
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|
| T |
41193770 |
aggtgaatttgttagatctcttacaggttggtcatggtctgaattggatgtgcatggaggagaagaaatcgc-tttgttgactgccatgaat--ttggtg |
41193866 |
T |
|
| Q |
214 |
catgagatgg |
223 |
Q |
| |
|
|||||||||| |
|
|
| T |
41193867 |
catgagatgg |
41193876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 223
Target Start/End: Original strand, 41408775 - 41408980
Alignment:
| Q |
15 |
gacaggttgctcaacactgacagttccaatgcagtgtcggtgccannnnnnncatgggcaggagcgaacaggatttggttgttgcatcagtggaagggaa |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||| | |||||||||| ||| ||||||| ||||||||| ||||||||||| |
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|
| T |
41408775 |
gacaggttgctcaacactgacagtttcaatgcagtgtccgtgccagttttttcgtgggcaggagtcgacatgatttggctgttgcatccgtggaagggaa |
41408874 |
T |
|
| Q |
115 |
ggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtgcatggaggagaagaaatcgcttttgttgactgccatgaattataggtgc |
214 |
Q |
| |
|
|| ||||||| ||||| ||||||| |||||||||||||||||||| ||| |||||||||||| ||| || |||||| |||||||| ||| ||||||| |
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|
| T |
41408875 |
ggcaaatttgtcagatcccttacagactggtcatggtctgaattggaggtgtatggaggagaagcaattgc-tttgtttactgccataaat--taggtgc |
41408971 |
T |
|
| Q |
215 |
atgagatgg |
223 |
Q |
| |
|
| ||||||| |
|
|
| T |
41408972 |
aggagatgg |
41408980 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0271 (Bit Score: 81; Significance: 3e-38; HSPs: 1)
Name: scaffold0271
Description:
Target: scaffold0271; HSP #1
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 22680 - 22475
Alignment:
| Q |
15 |
gacaggttgctcaacactgacagttccaatgcagtgtcggtgccannnnnnncatgggcaggagcgaacaggatttggttgttgcatcagtggaagggaa |
114 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||| |||||| | |||||||||| ||| ||||||| ||||||||| ||||||||||| |
|
|
| T |
22680 |
gacaggttgctcaacactgacagtttcaatgcagtgtccgtgccagttttttcgtgggcaggagtcgacatgatttggctgttgcatccgtggaagggaa |
22581 |
T |
|
| Q |
115 |
ggtgaatttgttagatctcttacaggttggtcatggtctgaattggaagtgcatggaggagaagaaatcgcttttgttgactgccatgaattataggtgc |
214 |
Q |
| |
|
|| ||||||| ||||| ||||||| |||||||||||||||||||| ||| |||||||||||| ||| || |||||| |||||||| ||| ||||||| |
|
|
| T |
22580 |
ggcaaatttgtcagatcccttacagactggtcatggtctgaattggaggtgtatggaggagaagcaattgc-tttgtttactgccataaat--taggtgc |
22484 |
T |
|
| Q |
215 |
atgagatgg |
223 |
Q |
| |
|
| ||||||| |
|
|
| T |
22483 |
aggagatgg |
22475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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