View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_high_76 (Length: 246)
Name: NF0821_high_76
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_high_76 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 54673990 - 54674231
Alignment:
| Q |
9 |
caataatataaattgtcaaatagatcatttatttaggga----gggagtattgttatgctaaaacaacgattgtgcaatactgccactaatgtctctctt |
104 |
Q |
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| T |
54673990 |
caataatatatattgtcaaacagatcatttatttagggacggagggagtattattatgctaaaacaacgattgtgcaatactgccagtaatgtctctctt |
54674089 |
T |
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| Q |
105 |
ggaggtacaagaatcgcattactcttcccacgtggtatatatattcaattcttgcatgagtttggaagatgtaatacacgggtaccggacttaaacaagg |
204 |
Q |
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| T |
54674090 |
ggaggtacaagaatcgcattactcttcccacgtggtatatatattcaattcttgcatgagtttggaagatgtaatacacgggtaccggacttaaacaagg |
54674189 |
T |
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| Q |
205 |
tttaggctaaggtaggagatttgtataggtctcttttaccgt |
246 |
Q |
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| T |
54674190 |
tttaggctacggtaggagacctgtataggtctctcttaccgt |
54674231 |
T |
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Back To:
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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 47
Target Start/End: Original strand, 33121754 - 33121792
Alignment:
| Q |
9 |
caataatataaattgtcaaatagatcatttatttaggga |
47 |
Q |
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| T |
33121754 |
caataatatatattgtcaaacagatcatttatttaggga |
33121792 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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