View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_high_8 (Length: 648)
Name: NF0821_high_8
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 499; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 499; E-Value: 0
Query Start/End: Original strand, 29 - 575
Target Start/End: Original strand, 40001159 - 40001710
Alignment:
| Q |
29 |
tagacttagaaacaacgtcaaaaacccatgatcaaatcattattcaaatgagtttttattgaaaatccatctaataaacacatg-agtataattgaacct |
127 |
Q |
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| T |
40001159 |
tagatttagaaacaacgtcaaaaacccatggtcaaatcattattcaaatgagtttttattgaaaatccatctaataaacacatggagtataattgaacct |
40001258 |
T |
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| Q |
128 |
aattttgacaacatcatttagattaaggccacatgtata----aattgtgtttacaattatacaattgcacatgatcaatatacagaggatactttataa |
223 |
Q |
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| T |
40001259 |
aattttgacaacatcatttagattaaggccacgtgtatatataaattgtgtttacaattatacaattggacatgatcaatagacagaggatactttataa |
40001358 |
T |
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| Q |
224 |
ctcacgagttcctttgagtttgagccaacagtagaatgcgattttttcttgggcgaagaagagaatccattagagaattctgtaacagaattatatcttc |
323 |
Q |
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| T |
40001359 |
ctcacgagttcctttgagtttgagccaacagtagaatgcgattttttcttgggcgaagaagagaatacattagagaattctgtaacagaattatatcttc |
40001458 |
T |
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| Q |
324 |
gataatcaattttctctccataatcatcaactcttgaatgagaagcttgttctccatggtaggtgtagtacccttgatcgatttcatggtaaaaatcgtt |
423 |
Q |
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| T |
40001459 |
gataatcaattttctctccataatcatcaactcttgaatgagaagctggttctccatggtaggtgtagtacccttgatcgatttcatggtaaaaatcgtt |
40001558 |
T |
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| Q |
424 |
gttacgtagagcacatcctgatgaaagacatttatattttctgcgactttttgtttttcttattactctgaaaatcataggcagaagaccctccataata |
523 |
Q |
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| T |
40001559 |
gttacgtagagcacatcctgatgaaagacatttatattttctgcgactttttgtttttcttattactctgaaaatcataggcagaagaccctccataata |
40001658 |
T |
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| Q |
524 |
tgtatcacaattcacaaccttaattccttcctttttgttcttgaagaataat |
575 |
Q |
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| T |
40001659 |
tgtatcacaattcacaaccttaattccttcctttttgttcttgaagaataat |
40001710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 263 - 400
Target Start/End: Original strand, 43103301 - 43103438
Alignment:
| Q |
263 |
gattttttcttgggcgaagaagagaatccattagagaattctgtaacagaattatatcttcgataatcaattttctctccataatcatcaactcttgaat |
362 |
Q |
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| T |
43103301 |
gatttttgcttaggtgaataagagaacccattagagaattccataacagaattatatcttcgataatcaattttgtctgcataatcatcaacccttgaat |
43103400 |
T |
|
| Q |
363 |
gagaagcttgttctccatggtaggtgtagtacccttga |
400 |
Q |
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| T |
43103401 |
tagaagattgttctccatggtagttgtagtgcccttga |
43103438 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 98 - 160
Target Start/End: Original strand, 43103127 - 43103190
Alignment:
| Q |
98 |
tctaataaacacatg-agtataattgaacctaattttgacaacatcatttagattaaggccaca |
160 |
Q |
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| T |
43103127 |
tctaataaacacatggagtataattgaacctaatttatgcaacatcatttagatgaagtccaca |
43103190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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