View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0821_low_100 (Length: 227)
Name: NF0821_low_100
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_100 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 218; Significance: 1e-120; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 54674667 - 54674888
Alignment:
| Q |
1 |
tccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacccagaatgaatccccaaattcagaaaaggaatctgccaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
54674667 |
tccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacccagaatgaatccccaaatccagaaaaggaatctgccaca |
54674766 |
T |
|
| Q |
101 |
aactcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
54674767 |
aactcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattct |
54674866 |
T |
|
| Q |
201 |
caattgtttacatgtccccagt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
54674867 |
caattgtttacatgtccccagt |
54674888 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 49 - 208
Target Start/End: Original strand, 41700835 - 41700989
Alignment:
| Q |
49 |
tcatccctaaacccagaatgaatccccaaattcagaaaaggaatctgccacaaactcaatacttatcttcatcccacaaatccccatacccgaattcaaa |
148 |
Q |
| |
|
|||||||||||| || |||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||| |||||| ||||||| ||| |
|
|
| T |
41700835 |
tcatccctaaacacaaaatgaatccccaaattcagaaaagaaatctgccacaaactcaatactcattttcatcccagaaatcctcatacccagatt---- |
41700930 |
T |
|
| Q |
149 |
gcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattctcaattgtt |
208 |
Q |
| |
|
|||||| ||||||||| ||||||||||| ||||||||| || |||||||||| ||||| |
|
|
| T |
41700931 |
-caaactgtatagtcatcatgaaacccataaatccctaaagcaggaaattctcagttgtt |
41700989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 3901623 - 3901402
Alignment:
| Q |
1 |
tccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacccagaatgaatccccaaattcagaaaaggaatctgccaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||| |
|
|
| T |
3901623 |
tccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacccataatgaatccccaaatccagaaaaggaatctgccaca |
3901524 |
T |
|
| Q |
101 |
aactcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattct |
200 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
3901523 |
aactcaatacttatcttcatctcacaaatccccatacccgaattcaaagcacactacatagtcatcctgaaacccataaatccctaaatcatgaaattct |
3901424 |
T |
|
| Q |
201 |
caattgtttacatgtccccagt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
3901423 |
caattgtttacatgtccccagt |
3901402 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 50488248 - 50488468
Alignment:
| Q |
1 |
tccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacccagaatgaatccccaaattcagaaaaggaatctgccaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
50488248 |
tccataaaccaataaattcatccacaaatcaattatccaccctgaaaatcatccctaaacccataatgaatccccaaattcagaaaaggaatctgccaca |
50488347 |
T |
|
| Q |
101 |
aactcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattct |
200 |
Q |
| |
|
||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| ||||||||||||||||||||| |
|
|
| T |
50488348 |
aactcaatactcatcttcatctcacaaatccccatacccgaattcaaagcacactacatagtcatcctg-aacccataaatccctaaatcatgaaattct |
50488446 |
T |
|
| Q |
201 |
caattgtttacatgtccccagt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
50488447 |
caattgtttacatgtccccagt |
50488468 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 1 - 219
Target Start/End: Complemental strand, 40561019 - 40560801
Alignment:
| Q |
1 |
tccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacccagaatgaatccccaaattcagaaaaggaatctgccaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| || ||||||||||||||||| |
|
|
| T |
40561019 |
tccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacctataatgaatccccaaatccataaaaggaatctgccaca |
40560920 |
T |
|
| Q |
101 |
aactcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattct |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
40560919 |
aactcaatactcatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccataaatccctaaatcatgaaattct |
40560820 |
T |
|
| Q |
201 |
caattgtttacatgtcccc |
219 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
40560819 |
caattgtttacatgtcccc |
40560801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 1 - 218
Target Start/End: Original strand, 41410946 - 41411163
Alignment:
| Q |
1 |
tccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacccagaatgaatccccaaattcagaaaaggaatctgccaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| ||||| |
|
|
| T |
41410946 |
tccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacccagaatgaatccccaaatccataaaaggaatctaccaca |
41411045 |
T |
|
| Q |
101 |
aactcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattct |
200 |
Q |
| |
|
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||| |
|
|
| T |
41411046 |
aactcaatactcatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccataaatccctaaatgatgaaattct |
41411145 |
T |
|
| Q |
201 |
caattgtttacatgtccc |
218 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
41411146 |
caattgtttacatgtccc |
41411163 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 190; Significance: 1e-103; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 36412322 - 36412543
Alignment:
| Q |
1 |
tccataaaccaataaattcatccacaaaccaattatccaccctgaaaatcatccctaaacccagaatgaatccccaaattcagaaaaggaatctgccaca |
100 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
36412322 |
tccataaaccaataaactcatccacaaaccaattatccaccctgaaaatcatccttaaacccagaatgaatccccaaatccagaaaaggaatctgccaca |
36412421 |
T |
|
| Q |
101 |
aactcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattct |
200 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
36412422 |
aactcaatactcatcttcatcccacaaatccccatacccgaattcaaagcaaactacgcagtcatcctgaaacccataaatccctaaatcatgaaattct |
36412521 |
T |
|
| Q |
201 |
caattgtttacatgtccccagt |
222 |
Q |
| |
|
||||||||| |||||||||||| |
|
|
| T |
36412522 |
caattgtttgcatgtccccagt |
36412543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 11148737 - 11148858
Alignment:
| Q |
100 |
aaactcaatacttatcttcatcccacaaatccccatacccgaattcaaagcaaactacatagtcatcctgaaacccatatatccctaaatcatgaaattc |
199 |
Q |
| |
|
|||||||||| | |||| |||||||||||||| |||||||||||||||||||||||||||||||||| |||||| || | |||||||| ||||||||||| |
|
|
| T |
11148737 |
aaactcaatagtcatctccatcccacaaatcctcatacccgaattcaaagcaaactacatagtcatcatgaaacacagaaatccctaagtcatgaaattc |
11148836 |
T |
|
| Q |
200 |
tcaattgtttacatgtccccagt |
222 |
Q |
| |
|
|||| || ||| ||||||||||| |
|
|
| T |
11148837 |
tcaaatg-ttatatgtccccagt |
11148858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 6258 times since January 2019
Visitors: 5764