View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0821_low_11 (Length: 612)
Name: NF0821_low_11
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_11 |
 | |
|
| [»] scaffold0653 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 443; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 4 - 549
Target Start/End: Original strand, 31454141 - 31454689
Alignment:
| Q |
4 |
ttttgttaagtaacttttgtttactaactgtaaaatttgctatggtggttgtagtttcctgtgggtaggatccacagacagctgaagcaaagagtccaag |
103 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31454141 |
ttttgttaagtaacttttgtttattaactgtaaaatttgccatggtggttgcagtttcctgtgggtaggatccacagacagctgaagcaaagagtccaag |
31454240 |
T |
|
| Q |
104 |
ctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctgactgctgaagttctggagctggctggaaatgctagcaaaga |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
31454241 |
ctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctgactgctgaagttcttgagctggctggaaatgctagcaaaga |
31454340 |
T |
|
| Q |
204 |
tttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatcaggggagacgaagaacttgatacccttatcaagggaacaattgctggtggtggt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || || |||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
31454341 |
tttgaaggtgaagaggatcacaccaaggcatttgcagcttgccatcaggggagatgaggagcttgatacccttatcaagggaacaatagctggtggtggt |
31454440 |
T |
|
| Q |
304 |
gtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgagttctttgcgtttgttgtcatgtggtggttctgtttattttaattaggg |
403 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||| ||| |||||||||||||||||| |
|
|
| T |
31454441 |
gtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgatttctttgcttttgttgtcatgtggcggtgctgtttattttaattagga |
31454540 |
T |
|
| Q |
404 |
gtg---tttttaattatgacttgaattgactttaaatcatggtgatcacattagggtagttttagaattttgaatgaattgatatggtagtgtgtaaatg |
500 |
Q |
| |
|
||| ||||| ||||||||||||||| |||| ||||||||||||||| | |||||||||||||||||||||||||||||| ||| |||||||||||||| |
|
|
| T |
31454541 |
gtgtgtttttttattatgacttgaattaacttgaaatcatggtgatcaaagtagggtagttttagaattttgaatgaattggtattgtagtgtgtaaatg |
31454640 |
T |
|
| Q |
501 |
gtggtattcttatgtggtcctttggttggtttaatttgtatgtcttaga |
549 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
31454641 |
gtgctattcttatgtggtcctttggttggtttaatttgtctgtcttaga |
31454689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 334; E-Value: 0
Query Start/End: Original strand, 56 - 571
Target Start/End: Original strand, 51448939 - 51449459
Alignment:
| Q |
56 |
agtttcctgtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctgga |
155 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
51448939 |
agtttcctgtgggtaggatccacagacagctgaagcacagagtccaagctaatggacgtgtgggagcaacagctgcagtgtatctggcatcaattctgga |
51449038 |
T |
|
| Q |
156 |
gtatctgactgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatcagggga |
255 |
Q |
| |
|
|||||||||| | ||||| || || |||||||||||||| || | ||||||||| |||||||||||||||||||| |||||||| || ||||| |||||| |
|
|
| T |
51449039 |
gtatctgactacagaagtacttgaactggctggaaatgcaagtagagatttgaatgtgaagaggatcacaccaagacatttgcaactggctattagggga |
51449138 |
T |
|
| Q |
256 |
gacgaagaacttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgag |
355 |
Q |
| |
|
|| || |||||||||||||||||||||||||| |||||||||||||||||||||||| |||| ||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
51449139 |
gatgaggaacttgatacccttatcaagggaacgattgctggtggtggtgtcattcctaacattcacaagtccttgatcaataaaactgccaaagaatgag |
51449238 |
T |
|
| Q |
356 |
ttctttgcgtttgttgtcatgtggtggttctgtttattttaattaggg--gtgtttttaattatgacttgaattgactttaaatcatggtgatcacatta |
453 |
Q |
| |
|
||| |||| ||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||||||||| |||| ||| |||||||| || |
|
|
| T |
51449239 |
ttc-ttgcttttgttgtcatgtggtggtgctgtttattttaattaggggtgtgtttttaatcatgacttgaattgacttaaaatgatgatgatcacagta |
51449337 |
T |
|
| Q |
454 |
gggtagttttagaattttgaatga----attgatatggtagtgtgtaaatggtggtattcttatgtggtcctttggttggtttaatttgtatgtcttaga |
549 |
Q |
| |
|
||||||||||| |||||||||| | ||||||||||| |||||||||||||||||||||||||| ||||||||| ||||||||||||| |||||||| |
|
|
| T |
51449338 |
gggtagttttacaattttgaatcaattgattgatatggtggtgtgtaaatggtggtattcttatgtcgtcctttggatggtttaatttgtccgtcttaga |
51449437 |
T |
|
| Q |
550 |
tatttgtgatgctgttggagtt |
571 |
Q |
| |
|
||||||||||| |||||||||| |
|
|
| T |
51449438 |
tatttgtgatgttgttggagtt |
51449459 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 151 - 326
Target Start/End: Complemental strand, 2216105 - 2215930
Alignment:
| Q |
151 |
ctggagtatctgactgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatca |
250 |
Q |
| |
|
||||||||| | ||||| || || ||||| ||||||| ||||| ||||| ||| ||||||||||| | || ||||| || ||| | || ||||||||| |
|
|
| T |
2216105 |
ctggagtatttaactgcagaggtgttggagttggctggcaatgcaagcaaggatctgaaggtgaagcgtattacacctagacatctacaacttgctatcc |
2216006 |
T |
|
| Q |
251 |
ggggagacgaagaacttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtc |
326 |
Q |
| |
|
| ||||||||||||||||| || || ||||| |||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
2216005 |
gtggagacgaagaacttgacactctcatcaaaggaacaatagctggtggtggtgttattcctcatatccacaagtc |
2215930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 151 - 326
Target Start/End: Complemental strand, 2224215 - 2224040
Alignment:
| Q |
151 |
ctggagtatctgactgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatca |
250 |
Q |
| |
|
||||||||| | ||||| || || ||||| ||||||| ||||| ||||| ||| ||||||||||| | || ||||| || ||| | || ||||||||| |
|
|
| T |
2224215 |
ctggagtatttaactgcagaggtgttggagttggctggcaatgcaagcaaggatctgaaggtgaagcgtattacaccgagacatctacaacttgctatcc |
2224116 |
T |
|
| Q |
251 |
ggggagacgaagaacttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtc |
326 |
Q |
| |
|
| ||||||||||||||||| || || ||||| |||||||| |||||||||||||| |||||||| ||||||||||| |
|
|
| T |
2224115 |
gtggagacgaagaacttgacactctcatcaaaggaacaatagctggtggtggtgttattcctcatatccacaagtc |
2224040 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 235; Significance: 1e-129; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 235; E-Value: 1e-129
Query Start/End: Original strand, 63 - 518
Target Start/End: Complemental strand, 9279972 - 9279526
Alignment:
| Q |
63 |
tgtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctg |
162 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| ||| ||||||| ||||||| | ||||||| ||| ||||||| ||||| ||||||||| |
|
|
| T |
9279972 |
tgtgggtaggatccacaaacagctgaagcaaagggtccaatataacagacgtgtgggagcaataactgcagtttatctggcatcaattctagagtatctg |
9279873 |
T |
|
| Q |
163 |
actgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatcaggggagacgaag |
262 |
Q |
| |
|
||||| |||||||| || |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| || | |
|
|
| T |
9279872 |
actgcggaagttcttgaactggctggaaatgcaggttaagatttgaaggtgaagaggatcacaccaaagcatttgcagctggctattaggggagatgagg |
9279773 |
T |
|
| Q |
263 |
aacttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgagttctttg |
362 |
Q |
| |
|
||| |||||||||||||||||||| |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||| |||| |
|
|
| T |
9279772 |
aac-------ccttatcaagggaacaattgttggtggtggtgtcatttctaacattcacaagtccttgatcaacaaaactgccaaagaacgagt-cttta |
9279681 |
T |
|
| Q |
363 |
cgtttgttgtcatgtggtggttctgtttattttaattaggggtgt--ttttaattatgacttgaattgactttaaatcatggtgatcacattagggtagt |
460 |
Q |
| |
|
| ||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||| |||||||| |||| || ||||||||| ||||||||| |
|
|
| T |
9279680 |
cttttgttgtcatgtggtg---ctgtttattttaattaggggtgtgttttttattatgacttggattgacttgaaatgatagtgatcacagtagggtagt |
9279584 |
T |
|
| Q |
461 |
tttagaattttgaatgaattgatatggtagtgtgtaaatggtggtattcttatgtggt |
518 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
|
|
| T |
9279583 |
tttagaattttgaatgaatttatatggtagtgtgtaaatggtgaaattcttatgtggt |
9279526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 76 - 378
Target Start/End: Complemental strand, 9247506 - 9247203
Alignment:
| Q |
76 |
cacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctgactgctgaagttc |
175 |
Q |
| |
|
|||||||||| |||||| ||| ||||| |||| | | ||| |||||||| ||||||| ||| ||||| ||||| |||||||||||||| ||||||| |
|
|
| T |
9247506 |
cacagacagcagaagcatagactccaaactaacgcatatgtgggagcaacgactgcagtttatccggcataaattctagagtatctgactgcggaagttc |
9247407 |
T |
|
| Q |
176 |
tggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatcaggggagacgaagaacttgataccct |
275 |
Q |
| |
|
| || |||||||||||| | | ||||||||||||||||||||||||||||||||||| |||||||| ||||| |||||||| || |||||||||||||| |
|
|
| T |
9247406 |
ttgaactggctggaaattcaaataaagatttgaaggtgaagaggatcacaccaaggcagttgcagctggctattaggggagatgaggaacttgataccct |
9247307 |
T |
|
| Q |
276 |
tatcaaggg-aacaattgctggtggtggtgtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgagttctttgcgtttgttgtca |
374 |
Q |
| |
|
||||||||| || || |||||||||| || ||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
9247306 |
tatcaagggaaaaaaatgctggtggttgtatcattccacacatccacaagtcctttatcaacaaaactgccaaagaatgagttctttgcttttgttgtca |
9247207 |
T |
|
| Q |
375 |
tgtg |
378 |
Q |
| |
|
|||| |
|
|
| T |
9247206 |
tgtg |
9247203 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 148; E-Value: 8e-78
Query Start/End: Original strand, 63 - 356
Target Start/End: Complemental strand, 9290943 - 9290657
Alignment:
| Q |
63 |
tgtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctggagtatctg |
162 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| |||||| ||| ||||||| ||||||| | ||||||| ||| ||||||| ||||| ||||||||| |
|
|
| T |
9290943 |
tgtgggtaggatccacaaacagctgaagcaaagggtccaatataacagacgtgtgggagcaataactgcagtttatctggcatcaattctagagtatctg |
9290844 |
T |
|
| Q |
163 |
actgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatcaggggagacgaag |
262 |
Q |
| |
|
||||| |||||||| || |||||||||||||| | |||||||||||||||||||||||||||||| |||||||||||| ||||| |||||||| || | |
|
|
| T |
9290843 |
actgcggaagttcttgaactggctggaaatgcaggttaagatttgaaggtgaagaggatcacaccaaagcatttgcagctggctattaggggagatgagg |
9290744 |
T |
|
| Q |
263 |
aacttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgagt |
356 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||||||||| || |||| ||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
9290743 |
a-------acccttatcaagggaacaattgttggtggtggtgtcatttctaacattcacaagtccttgatcaacaaaactgccaaagaacgagt |
9290657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 130; E-Value: 5e-67
Query Start/End: Original strand, 232 - 500
Target Start/End: Original strand, 9279215 - 9279478
Alignment:
| Q |
232 |
catttgcagcttgctatcaggggagacgaagaacttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtccttga |
331 |
Q |
| |
|
||||||||||| ||||| |||||||| || ||| |||||||||||||||||||||||||| |||||||| |||||||||||||||| |||||||||||| |
|
|
| T |
9279215 |
catttgcagctcgctattaggggagatgaggaatttgatacccttatcaagggaacaattcctggtggttgtgtcattcctcacattgacaagtccttga |
9279314 |
T |
|
| Q |
332 |
tcaacaaaactgccaaagaatgagttctttgcgtttgttgtcatgtggtggttctgtttattttaattagggg---tgtttttaattatgacttgaattg |
428 |
Q |
| |
|
||||| |||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||||| | ||||||| |||||||||||||||| |
|
|
| T |
9279315 |
tcaac-aaactgccaaagaatgag---tttgcttttgttgtcatttggtg---atgtttattttaattaggaggtatgttttttattatgacttgaattg |
9279407 |
T |
|
| Q |
429 |
actttaaatcatggtgatcacattagggtagttttagaattttgaatgaattgatatggtagtgtgtaaatg |
500 |
Q |
| |
|
| || |||| ||||||||||| ||||||||||||| ||||||||| ||||| ||||||||||||||||||| |
|
|
| T |
9279408 |
atttgaaataatggtgatcaccgtagggtagttttataattttgaa-gaatttatatggtagtgtgtaaatg |
9279478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 56 - 425
Target Start/End: Original strand, 17200165 - 17200533
Alignment:
| Q |
56 |
agtttcctgtgggtaggatccacagacagctgaagcaaagagtccaagctaatggacgtgtcggagcaacagctgcagtgtatttggcatccattctgga |
155 |
Q |
| |
|
|||||| ||||||||||||||||| | ||||||||||||||||||| |||||||||||||| ||||||||||||| ||| ||| ||||||| ||||| || |
|
|
| T |
17200165 |
agtttcatgtgggtaggatccacaaatagctgaagcaaagagtccatgctaatggacgtgtgggagcaacagctgtagtttatctggcatcaattctaga |
17200264 |
T |
|
| Q |
156 |
gtatctgactgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaagaggatcacaccaaggcatttgcagcttgctatcagggga |
255 |
Q |
| |
|
|||||||||| | |||||| | || | ||||| |||||| | ||| ||||||||| ||||||||||||||||||||||||||||||| ||||| |||||| |
|
|
| T |
17200265 |
gtatctgactacagaagttttagaaccggctgaaaatgcaaccaatgatttgaagttgaagaggatcacaccaaggcatttgcagctggctattagggga |
17200364 |
T |
|
| Q |
256 |
gacgaagaacttgatacccttatcaagggaacaattgctggtggtggtgtcattcctcacatccacaagtccttgatcaacaaaactgccaaagaatgag |
355 |
Q |
| |
|
|| || ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||| ||||||||||| |
|
|
| T |
17200365 |
gatgaggaacttgatacccttgtcaagggaacaattgctggtggtggtgtcattcctaacattcacaagtccttgatcaacaaaactatcaaagaatgag |
17200464 |
T |
|
| Q |
356 |
ttctttgcgtttgttgtcatgtggtggttctgtttattttaattaggg--gtgtttttaattatgacttgaa |
425 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
17200465 |
ttctttgcttttgttgtcatgtggtg---ttgtttattttaattaggggtgtgttttttattatgacttgaa |
17200533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 146; Significance: 1e-76; HSPs: 1)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 118 - 378
Target Start/End: Original strand, 6424 - 6685
Alignment:
| Q |
118 |
ggagcaacagctgcagtgtatttggcatccattctggagtatctgactgctgaagttctggagctggctggaaatgctagcaaagatttgaaggtgaaga |
217 |
Q |
| |
|
|||||||| ||||||| ||| ||||| ||||| |||||||||||||| |||||||| || |||||||||||| | | ||||||||||||||||||| |
|
|
| T |
6424 |
ggagcaacgactgcagtttatccggcataaattctagagtatctgactgcggaagttcttgaactggctggaaattcaaataaagatttgaaggtgaaga |
6523 |
T |
|
| Q |
218 |
ggatcacaccaaggcatttgcagcttgctatcaggggagacgaagaacttgatacccttatcaaggg-aacaattgctggtggtggtgtcattcctcaca |
316 |
Q |
| |
|
|||||||||||||||| |||||||| ||||| |||||||| || ||||||||||||||||||||||| || || |||||||||| || ||||||| |||| |
|
|
| T |
6524 |
ggatcacaccaaggcagttgcagctggctattaggggagatgaggaacttgatacccttatcaagggaaaaaaatgctggtggttgtatcattccacaca |
6623 |
T |
|
| Q |
317 |
tccacaagtccttgatcaacaaaactgccaaagaatgagttctttgcgtttgttgtcatgtg |
378 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
6624 |
tccacaagtcctttatcaacaaaactgccaaagaatgagttctttgcttttgttgtcatgtg |
6685 |
T |
|
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