View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_112 (Length: 203)
Name: NF0821_low_112
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_112 |
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Alignment Details
Target: chr1 (Bit Score: 127; Significance: 9e-66; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 131
Target Start/End: Complemental strand, 4124337 - 4124207
Alignment:
| Q |
1 |
gggacctcgacaacaaaccaccacgcggaccaccctacaacgccgccctatctctcaaaaacctcgccgaacgtttcggcgacgtaaccgacatctccgc |
100 |
Q |
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| T |
4124337 |
gggacctcgacaacaaaccaccacgcggaccaccctacaacgccgccgtatctctcaaaaacctcgccgaacgtttcggcgacgtaaccgacatctccgc |
4124238 |
T |
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| Q |
101 |
ttacgccaaccgccacgctttcattcatctc |
131 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
4124237 |
ttacgccaaccgccacgctttcattcatctc |
4124207 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 85
Target Start/End: Original strand, 5659799 - 5659883
Alignment:
| Q |
1 |
gggacctcgacaacaaaccaccacgcggaccaccctacaacgccgccctatctctcaaaaacctcgccgaacgtttcggcgacgt |
85 |
Q |
| |
|
|||||||||||||||||||||||| |||||||| ||||||||||| || |||||||||| | |||||||||| ||||||||||| |
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| T |
5659799 |
gggacctcgacaacaaaccaccacatggaccaccatacaacgccgcactctctctcaaaaccttcgccgaacgcttcggcgacgt |
5659883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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