View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_low_12 (Length: 607)

Name: NF0821_low_12
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_low_12
NF0821_low_12
[»] chr3 (20 HSPs)
chr3 (281-523)||(38053790-38054032)
chr3 (72-249)||(38053581-38053758)
chr3 (55-157)||(33674384-33674486)
chr3 (55-151)||(9198038-9198134)
chr3 (50-159)||(32325992-32326105)
chr3 (55-151)||(36878898-36878993)
chr3 (56-151)||(32117941-32118036)
chr3 (72-168)||(36618085-36618178)
chr3 (72-157)||(32582592-32582676)
chr3 (55-151)||(18084870-18084965)
chr3 (76-144)||(54481485-54481553)
chr3 (71-150)||(20873056-20873135)
chr3 (283-342)||(28720846-28720905)
chr3 (61-127)||(32109878-32109944)
chr3 (73-127)||(42218283-42218337)
chr3 (55-96)||(1742791-1742832)
chr3 (50-107)||(37083966-37084023)
chr3 (74-127)||(40479462-40479515)
chr3 (62-138)||(3729849-3729925)
chr3 (55-119)||(33282334-33282398)
[»] scaffold0010 (1 HSPs)
scaffold0010 (50-150)||(166714-166814)
[»] chr8 (12 HSPs)
chr8 (61-159)||(35764711-35764809)
chr8 (73-151)||(28947309-28947387)
chr8 (73-151)||(2111013-2111091)
chr8 (72-127)||(8407584-8407639)
chr8 (64-151)||(43408663-43408750)
chr8 (61-158)||(925968-926065)
chr8 (72-119)||(14896451-14896498)
chr8 (50-93)||(18892201-18892244)
chr8 (83-150)||(37740756-37740823)
chr8 (73-123)||(4781257-4781307)
chr8 (55-101)||(10861072-10861117)
chr8 (73-126)||(25099576-25099629)
[»] chr6 (15 HSPs)
chr6 (50-151)||(29052673-29052773)
chr6 (72-151)||(34544421-34544500)
chr6 (73-127)||(8014439-8014493)
chr6 (61-98)||(9195839-9195876)
chr6 (72-144)||(5976770-5976842)
chr6 (72-127)||(6830682-6830737)
chr6 (55-150)||(9749801-9749896)
chr6 (72-115)||(9750320-9750363)
chr6 (72-114)||(17303110-17303152)
chr6 (73-127)||(27720057-27720111)
chr6 (50-96)||(29490202-29490248)
chr6 (78-127)||(2748302-2748351)
chr6 (61-98)||(9195627-9195664)
chr6 (61-125)||(2046043-2046107)
chr6 (61-93)||(2255673-2255705)
[»] chr4 (26 HSPs)
chr4 (73-151)||(34812665-34812743)
chr4 (84-151)||(52327445-52327512)
chr4 (72-159)||(39276510-39276597)
chr4 (61-136)||(44555579-44555654)
chr4 (55-151)||(30802408-30802503)
chr4 (72-151)||(2103188-2103267)
chr4 (64-127)||(3535288-3535351)
chr4 (283-358)||(30254010-30254085)
chr4 (62-149)||(37713440-37713527)
chr4 (51-125)||(21191203-21191277)
chr4 (64-125)||(50133274-50133335)
chr4 (109-157)||(30070328-30070376)
chr4 (50-125)||(12637716-12637791)
chr4 (51-125)||(27247463-27247537)
chr4 (73-139)||(41758653-41758718)
chr4 (73-127)||(56269503-56269557)
chr4 (73-138)||(4149051-4149116)
chr4 (66-107)||(25886112-25886153)
chr4 (73-126)||(37338544-37338597)
chr4 (61-138)||(42617729-42617805)
chr4 (72-152)||(6323840-6323920)
chr4 (55-119)||(23308719-23308782)
chr4 (72-100)||(24418149-24418177)
chr4 (93-149)||(27611812-27611868)
chr4 (73-157)||(39033634-39033718)
chr4 (61-97)||(39773815-39773851)
[»] chr5 (18 HSPs)
chr5 (55-144)||(17259587-17259676)
chr5 (72-150)||(31677291-31677369)
chr5 (50-151)||(6462239-6462339)
chr5 (84-128)||(13838741-13838785)
chr5 (72-119)||(1621439-1621486)
chr5 (72-127)||(17902785-17902840)
chr5 (72-151)||(34640176-34640255)
chr5 (61-151)||(2942055-2942145)
chr5 (283-341)||(11237677-11237735)
chr5 (61-151)||(31806583-31806673)
chr5 (62-144)||(41892767-41892849)
chr5 (81-138)||(32046916-32046973)
chr5 (74-138)||(28363539-28363603)
chr5 (55-94)||(35785574-35785613)
chr5 (72-147)||(43315535-43315610)
chr5 (78-148)||(9005331-9005401)
chr5 (72-106)||(22572689-22572723)
chr5 (72-100)||(32882865-32882893)
[»] chr2 (16 HSPs)
chr2 (55-127)||(28249836-28249908)
chr2 (50-157)||(8752584-8752690)
chr2 (50-151)||(5946559-5946660)
chr2 (77-151)||(30804367-30804441)
chr2 (73-127)||(42139523-42139577)
chr2 (50-127)||(14477608-14477684)
chr2 (55-118)||(18491947-18492010)
chr2 (72-119)||(27679228-27679275)
chr2 (77-141)||(15967966-15968030)
chr2 (72-124)||(21721917-21721969)
chr2 (72-138)||(21938036-21938102)
chr2 (72-144)||(27863867-27863939)
chr2 (79-123)||(33651184-33651228)
chr2 (73-151)||(12238220-12238298)
chr2 (72-100)||(4751783-4751811)
chr2 (50-150)||(9613733-9613833)
[»] chr1 (29 HSPs)
chr1 (76-152)||(32348407-32348483)
chr1 (50-127)||(22593522-22593599)
chr1 (73-157)||(3160987-3161071)
chr1 (61-152)||(11337227-11337318)
chr1 (61-152)||(11495246-11495337)
chr1 (50-139)||(30173401-30173490)
chr1 (50-138)||(3949641-3949729)
chr1 (72-151)||(28870462-28870541)
chr1 (72-127)||(35058682-35058737)
chr1 (72-150)||(1714030-1714108)
chr1 (76-157)||(21516493-21516574)
chr1 (64-125)||(23908839-23908900)
chr1 (50-118)||(1415860-1415928)
chr1 (50-150)||(31117590-31117689)
chr1 (64-151)||(7460242-7460328)
chr1 (68-150)||(40942413-40942495)
chr1 (86-154)||(5923865-5923933)
chr1 (84-144)||(32602949-32603009)
chr1 (72-157)||(28870864-28870946)
chr1 (55-97)||(15801269-15801311)
chr1 (83-141)||(31795352-31795410)
chr1 (73-127)||(34320066-34320120)
chr1 (78-151)||(35272478-35272552)
chr1 (72-118)||(40856631-40856677)
chr1 (77-130)||(4372812-4372865)
chr1 (78-127)||(35926534-35926583)
chr1 (74-130)||(18346814-18346870)
chr1 (73-105)||(36021204-36021236)
chr1 (74-114)||(36422762-36422802)
[»] chr7 (13 HSPs)
chr7 (71-151)||(2525285-2525365)
chr7 (72-147)||(15050965-15051040)
chr7 (92-150)||(15050624-15050682)
chr7 (55-101)||(42967867-42967913)
chr7 (72-157)||(13438306-13438391)
chr7 (71-127)||(87165-87221)
chr7 (55-151)||(31740563-31740658)
chr7 (72-107)||(36112697-36112732)
chr7 (72-119)||(44235370-44235417)
chr7 (72-118)||(883879-883925)
chr7 (72-118)||(1243208-1243254)
chr7 (79-157)||(3837088-3837161)
chr7 (72-136)||(28175449-28175513)
[»] scaffold0022 (1 HSPs)
scaffold0022 (74-150)||(84838-84914)
[»] scaffold0349 (1 HSPs)
scaffold0349 (73-127)||(9479-9533)


Alignment Details
Target: chr3 (Bit Score: 243; Significance: 1e-134; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 281 - 523
Target Start/End: Original strand, 38053790 - 38054032
Alignment:
Q  281 agttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctatagatgtgctgacatggatcgagagattcctgcactcatggg 380  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38053790 agttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctatagatgtgctgacatggatcgagagattcctgcactcatggg 38053889  T
Q  381 tgtttcgaaggccattttggaaaatgttatattcgttcatcaagatgaagcaaattggccacttcaagatccttccacgttaaagaagaagtttgatgac 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38053890 tgtttcgaaggccattttggaaaatgttatattcgttcatcaagatgaagcaaattggccacttcaagatccttccacgttaaagaagaagtttgatgac 38053989  T
Q  481 atcttttccgcaactcggtaccttctactaatccctctttcat 523  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  38053990 atcttttccgcaactcggtaccttctactaatccctctttcat 38054032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 123; E-Value: 7e-63
Query Start/End: Original strand, 72 - 249
Target Start/End: Original strand, 38053581 - 38053758
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactattattaccaaacaga 171  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  38053581 tttttatgtcatttcatatttataagctatctcaactgctaattttactaaacactccatattcgattagctagcttatcaactattattaccaaacaga 38053680  T
Q  172 gccttaaattcttgaaaatgtannnnnnnnnnnnnaatttccttatatttatattatggtatgtactttactggctga 249  Q
    |||||||||||||||||||||              |||||| ||||||||||||||||||||||||||||||||||||    
T  38053681 gccttaaattcttgaaaatgtttttttttttttttaatttcgttatatttatattatggtatgtactttactggctga 38053758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 55 - 157
Target Start/End: Complemental strand, 33674486 - 33674384
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaac 154  Q
    ||||| ||||||||| ||||| | |||| ||||||||||| |||||| ||||||||| ||||||  ||||||| || ||||||| |||||||||||||||    
T  33674486 attaattaaatatatcattttcacgtcacttcatatttatgagctagttcaactgctgattttagcaaacactacaaattcaatgagctagcttatcaac 33674387  T
Q  155 tat 157  Q
    |||    
T  33674386 tat 33674384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 9198134 - 9198038
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||| ||||||||| ||||||||||||||||||||||| || |||| |||||  |||||||||| ||||||| || ||||||| | ||| ||||||    
T  9198134 attaattaaatatattatttttatgtcatttcatatttacaaactagttcaacaactaattttaccaaacactacagattcaatcaactaacttatc 9198038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 50 - 159
Target Start/End: Complemental strand, 32326105 - 32325992
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatattt----ataagctagctcaactgctaattttactaaacactccatattcaattagctag 145  Q
    |||| ||||| ||||||||| ||||||||||||||||||| ||    ||||||||| |||||| |||||||||| ||||||| || |||| || | ||||    
T  32326105 taaatattaattaaatatatcatttttatgtcatttcataattataaataagctagttcaactactaattttaccaaacactacaaattccatcaactag 32326006  T
Q  146 cttatcaactatta 159  Q
    |||||| |||||||    
T  32326005 cttatccactatta 32325992  T

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Target: chr3; HSP #6
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 36878993 - 36878898
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||| |||||||||| |||||||||||||||||||| ||||||||  |||| ||| || ||||| ||||||| ||| |||||| ||||| ||||||    
T  36878993 attaattaaatatatattttttatgtcatttcatattgataagctaattcaattgc-aaatttaccaaacactgcatgttcaatcagctaccttatc 36878898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 56 - 151
Target Start/End: Original strand, 32117941 - 32118036
Alignment:
Q  56 ttaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    |||| |||||||||  |||| |||| |||||||||||||||||||| ||| |||||||| |||| |||||||  | ||||| | ||||||||||||    
T  32117941 ttaattaaatatatctttttcatgttatttcatatttataagctagttcagctgctaatcttaccaaacactaaaaattcagtcagctagcttatc 32118036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 72 - 168
Target Start/End: Original strand, 36618085 - 36618178
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactattattaccaaac 168  Q
    ||||||||||||||| |||| ||||||||| |||   |||||||||||  |||||| || |||||||| |||||||||||| ||| | |||||||||    
T  36618085 tttttatgtcatttcgtattgataagctagttca---gctaattttaccgaacactacaaattcaattggctagcttatcagctaattttaccaaac 36618178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 32582592 - 32582676
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 157  Q
    |||||||||||||||||| |||||||||| ||  || ||||||||||| ||||||| || ||||||| | |||| |||||| ||||    
T  32582592 tttttatgtcatttcatacttataagcta-cttcacggctaattttaccaaacactacaaattcaatcaactaggttatcagctat 32582676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 18084965 - 18084870
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||| ||||||||| | ||||||||||||| ||||||||||| ||  |||| |  ||||||||| ||||||| || ||||||| ||||| ||||||    
T  18084965 attaattaaatatatcagttttatgtcattttatatttataagttaattcaa-tcgtaattttaccaaacactgcaaattcaatcagctaacttatc 18084870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 76 - 144
Target Start/End: Complemental strand, 54481553 - 54481485
Alignment:
Q  76 tatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagcta 144  Q
    ||||| |||||||||||||||| ||||||||| | ||||||||  |||||||  | |||||||||||||    
T  54481553 tatgttatttcatatttataagttagctcaacagataattttatcaaacactataaattcaattagcta 54481485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 71 - 150
Target Start/End: Complemental strand, 20873135 - 20873056
Alignment:
Q  71 atttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 150  Q
    |||||||||||||||||||| |||||| ||  ||||| ||| ||||||| |||||||  | ||||||| ||||| |||||    
T  20873135 atttttatgtcatttcatatgtataagttacttcaaccgctgattttaccaaacactaaaaattcaataagctaacttat 20873056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 283 - 342
Target Start/End: Original strand, 28720846 - 28720905
Alignment:
Q  283 ttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctataga 342  Q
    ||||| |||||| |||||||| ||||||||||||||| ||| |||| ||||| |||||||    
T  28720846 ttctcaaattaatttgacctggttgctctgctctattggaatgtttaccttaactataga 28720905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 127
Target Start/End: Original strand, 32109878 - 32109944
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    |||||||||  ||||||||||||||||||| |||||||||| | | |  |||||||||| |||||||    
T  32109878 taaatatatcttttttatgtcatttcatatatataagctagttaagccactaattttaccaaacact 32109944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 42218283 - 42218337
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    ||||||||||||| | |||||| |||||| ||||| ||||||||||| |||||||    
T  42218283 ttttatgtcattttacatttatcagctagttcaaccgctaattttaccaaacact 42218337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 55 - 96
Target Start/End: Original strand, 1742791 - 1742832
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataa 96  Q
    ||||| ||||||||| |||||||| |||||||||||||||||    
T  1742791 attaattaaatatatgatttttatatcatttcatatttataa 1742832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 50 - 107
Target Start/End: Original strand, 37083966 - 37084023
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaac 107  Q
    |||||||||| |||||||||  | |||||||||||||||| |||||| |||| |||||    
T  37083966 taaacattaattaaatatatcttatttatgtcatttcatacttataaactagttcaac 37084023  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 74 - 127
Target Start/End: Complemental strand, 40479515 - 40479462
Alignment:
Q  74 tttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    |||||||||||| | |||||| |||||| | |||||||| ||||||||||||||    
T  40479515 tttatgtcattttacatttatcagctagttgaactgctatttttactaaacact 40479462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 62 - 138
Target Start/End: Original strand, 3729849 - 3729925
Alignment:
Q  62 aaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaat 138  Q
    ||||||||  ||| ||||| ||||||||||||||||| || ||||| ||||||  ||| ||||||| || |||||||    
T  3729849 aaatatatcttttatatgttatttcatatttataagccagttcaaccgctaatcataccaaacactacaaattcaat 3729925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 33282398 - 33282334
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttac 119  Q
    ||||| ||||||||| | |||||||||||||||||||| |||  ||  ||||| |||||||||||    
T  33282398 attaattaaatatatcacttttatgtcatttcatatttgtaacttaattcaacagctaattttac 33282334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0010 (Bit Score: 61; Significance: 7e-26; HSPs: 1)
Name: scaffold0010
Description:

Target: scaffold0010; HSP #1
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 166714 - 166814
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagctta 149  Q
    |||||||| | ||||||||| |||| |||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || ||||||| ||||||||||    
T  166714 taaacattcattaaatatatcatttctatgtcatttcatatttataagctagttcaaccgctaattttaccaaacactacaaattcaatcagctagctta 166813  T
Q  150 t 150  Q
    |    
T  166814 t 166814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 59; Significance: 1e-24; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 61 - 159
Target Start/End: Original strand, 35764711 - 35764809
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactatta 159  Q
    ||||||||| |||||||||||||||||||||||||| |||| ||||| ||||||||||| ||||||| || ||||||| | |||| |||||||||||||    
T  35764711 taaatatattatttttatgtcatttcatatttataaactagttcaaccgctaattttaccaaacactgcaaattcaatcaactagattatcaactatta 35764809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 28947387 - 28947309
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||||||||||||||||||||||||||| |||||  | |||||||||||||||| || ||||||| ||||||||||||    
T  28947387 ttttatgtcatttcatatttataagctagttcaaccacaaattttactaaacactgcaaattcaatcagctagcttatc 28947309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 73 - 151
Target Start/End: Original strand, 2111013 - 2111091
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||||||||||||||||||||||||||| ||||| ||||||||||| ||||||| || ||||||| || || ||||||    
T  2111013 ttttatgtcatttcatatttataagctagttcaaccgctaattttaccaaacactgcaaattcaatcagttatcttatc 2111091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 8407584 - 8407639
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    |||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||    
T  8407584 tttttatgtcatttcatatttataagctagttcaaccgctaattttaccaaacact 8407639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 43408663 - 43408750
Alignment:
Q  64 atatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    |||||| | |||| |||||||||||||||||||||||| |||| | |||||||||| ||||||| || |||||||  |||||||||||    
T  43408663 atatattaattttttgtcatttcatatttataagctagttcaattactaattttaccaaacactacaaattcaatcggctagcttatc 43408750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 61 - 158
Target Start/End: Original strand, 925968 - 926065
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactatt 158  Q
    ||||||||| ||||||  ||||||||||||||||||||| | |||||  || ||||||| ||||||  || ||||||| ||||||||||||| |||||    
T  925968 taaatatatcatttttgcgtcatttcatatttataagctggttcaaccactcattttaccaaacacaacaaattcaatcagctagcttatcatctatt 926065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 14896451 - 14896498
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttac 119  Q
    ||||||||| |||||||||||||||||||| |||||  ||||||||||    
T  14896451 tttttatgtgatttcatatttataagctagttcaacaactaattttac 14896498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 93
Target Start/End: Complemental strand, 18892244 - 18892201
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatattta 93  Q
    |||| ||||| |||||||||| ||||||||||||||||||||||    
T  18892244 taaatattaattaaatatatattttttatgtcatttcatattta 18892201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 37740756 - 37740823
Alignment:
Q  83 tttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 150  Q
    ||||||||||| ||||||| ||||| ||||||| ||  ||||||| || ||||||| |||||||||||    
T  37740756 tttcatatttaaaagctagttcaacagctaattgtatcaaacactacaaattcaatcagctagcttat 37740823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 123
Target Start/End: Original strand, 4781257 - 4781307
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaa 123  Q
    ||||||||||||||||||||||| | ||| |||||  ||||||||||||||    
T  4781257 ttttatgtcatttcatatttatatgatagttcaaccactaattttactaaa 4781307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 10861072 - 10861117
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctag 101  Q
    ||||| |||||||||| ||| ||||||||||||||||||||||||||    
T  10861072 attaattaaatatata-tttatatgtcatttcatatttataagctag 10861117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Complemental strand, 25099629 - 25099576
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacac 126  Q
    ||||||||||||| |||||||| |||||  ||||| ||||||||||| ||||||    
T  25099629 ttttatgtcattttatatttatcagctacttcaacagctaattttaccaaacac 25099576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 54; Significance: 1e-21; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 50 - 151
Target Start/End: Original strand, 29052673 - 29052773
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagctta 149  Q
    |||| ||||| |||||||||| |||||||||||||||||||||||||||||| | ||| ||| ||||||| ||||||| || ||||||| ||||||||||    
T  29052673 taaatattaattaaatatata-tttttatgtcatttcatatttataagctaggtgaaccgcttattttaccaaacactgcaaattcaatcagctagctta 29052771  T
Q  150 tc 151  Q
    ||    
T  29052772 tc 29052773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 34544421 - 34544500
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    |||||||||||||||||||||||||||||| |||||  |||||| ||  ||||||| || ||||||   |||||||||||    
T  34544421 tttttatgtcatttcatatttataagctagttcaaccactaattgtatcaaacactacaaattcaacccgctagcttatc 34544500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 8014493 - 8014439
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    |||| ||||||||||| |||||||||||| || |||||||||||||| |||||||    
T  8014493 ttttttgtcatttcatgtttataagctagttcgactgctaattttaccaaacact 8014439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 9195839 - 9195876
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataagc 98  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  9195839 taaatatatcatttttatgtcatttcatatttataagc 9195876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 5976770 - 5976842
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagcta 144  Q
    |||||||||||||| ||||||||||| ||  |||||||| |||||||| ||||| | || ||||||| |||||    
T  5976770 tttttatgtcattttatatttataagttacttcaactgcaaattttaccaaacattgcagattcaatgagcta 5976842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 6830682 - 6830737
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    ||||||| |||||| ||||||||||| ||| || |||||||||||||| |||||||    
T  6830682 tttttatatcattttatatttataagttagttctactgctaattttacgaaacact 6830737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 150
Target Start/End: Complemental strand, 9749896 - 9749801
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 150  Q
    ||||| ||||||||| ||||| |||| | ||||||||||||  |||  |||||  |||||||||| ||||||| || ||| ||| |||||||||||    
T  9749896 attaattaaatatattattttcatgttacttcatatttatacactacttcaaccactaattttaccaaacactacaaattaaatcagctagcttat 9749801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 115
Target Start/End: Original strand, 9750320 - 9750363
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaatt 115  Q
    ||||||||| |||||||||||||||||||| ||||| |||||||    
T  9750320 tttttatgtgatttcatatttataagctagttcaacagctaatt 9750363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 114
Target Start/End: Complemental strand, 17303152 - 17303110
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaat 114  Q
    |||||||||||||||||||||||||| ||| | ||||||||||    
T  17303152 tttttatgtcatttcatatttataagatagtttaactgctaat 17303110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 27720111 - 27720057
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    ||||||||||||| | ||||||||||||| | ||| ||||||||||| |||||||    
T  27720111 ttttatgtcattttacatttataagctagttgaaccgctaattttaccaaacact 27720057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 50 - 96
Target Start/End: Original strand, 29490202 - 29490248
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataa 96  Q
    |||| |||| |||||||||| |||||||| |||||||||||||||||    
T  29490202 taaatattacctaaatatattatttttatatcatttcatatttataa 29490248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 2748351 - 2748302
Alignment:
Q  78 tgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    ||||||||||||||||||| |||| ||||| | |||||||| ||||||||    
T  2748351 tgtcatttcatatttataaactagttcaaccgttaattttattaaacact 2748302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 98
Target Start/End: Original strand, 9195627 - 9195664
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataagc 98  Q
    ||||||||  ||||||||||||||||||||||||||||    
T  9195627 taaatataccatttttatgtcatttcatatttataagc 9195664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 125
Target Start/End: Complemental strand, 2046107 - 2046043
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaaca 125  Q
    ||||||||| | || ||||| |||||||||||||||| ||  ||||| ||||||||||| |||||    
T  2046107 taaatatatcaattctatgttatttcatatttataagttaattcaacagctaattttaccaaaca 2046043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 93
Target Start/End: Original strand, 2255673 - 2255705
Alignment:
Q  61 taaatatataatttttatgtcatttcatattta 93  Q
    ||||||||| |||||||||||||||||||||||    
T  2255673 taaatatatcatttttatgtcatttcatattta 2255705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 51; Significance: 6e-20; HSPs: 26)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 34812743 - 34812665
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||||||||||||||||||||||||||| |||||  | |||||||||||||||| || ||||||| ||||||||||||    
T  34812743 ttttatgtcatttcatatttataagctagttcaaccacaaattttactaaacactgcaaattcaatcagctagcttatc 34812665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 151
Target Start/End: Original strand, 52327445 - 52327512
Alignment:
Q  84 ttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    |||||||||||||||||| ||||||||||||||||| ||||||| || ||||||  ||||||||||||    
T  52327445 ttcatatttataagctagttcaactgctaattttaccaaacactacaaattcaaccagctagcttatc 52327512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 159
Target Start/End: Original strand, 39276510 - 39276597
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactatta 159  Q
    |||||||||||||| | ||||||||||||| |||||  |||||||||| ||||||| || ||||||| |||||| |||| | ||||||    
T  39276510 tttttatgtcatttaagatttataagctagttcaaccactaattttaccaaacactacaaattcaatcagctaggttataagctatta 39276597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 61 - 136
Target Start/End: Complemental strand, 44555654 - 44555579
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattca 136  Q
    ||||||||| | ||||||||||||||||||||||||| ||| | ||| ||||||||||| ||||||| || |||||    
T  44555654 taaatatatcacttttatgtcatttcatatttataaggtagtttaaccgctaattttaccaaacactacagattca 44555579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 30802408 - 30802503
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||| ||||||||| | ||||||||||||||||||||||||| ||  |||| |  ||||||||| ||||||| || ||||||| ||||| ||||||    
T  30802408 attaattaaatatatcagttttatgtcatttcatatttataagttaattcaa-tcgtaattttaccaaacactacaaattcaataagctaacttatc 30802503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 2103267 - 2103188
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    |||||||||||||| ||||||||||| | | |||||   ||||||||| ||||||| || ||||||| ||||||||||||    
T  2103267 tttttatgtcattttatatttataagtttgttcaaccattaattttaccaaacactacaaattcaataagctagcttatc 2103188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 64 - 127
Target Start/End: Original strand, 3535288 - 3535351
Alignment:
Q  64 atatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    |||||| ||||||||||||||||||||||||||| ||  ||||||| ||| ||||| |||||||    
T  3535288 atatattatttttatgtcatttcatatttataagttaattcaactggtaaatttaccaaacact 3535351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 283 - 358
Target Start/End: Complemental strand, 30254085 - 30254010
Alignment:
Q  283 ttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctatagatgtgctgacatggatc 358  Q
    ||||| ||||||||||||||| ||||||||||||||| ||| |||| ||||| ||||| | ||||| |||| ||||    
T  30254085 ttctcaaattaacttgacctggttgctctgctctattggaatgtttaccttaactatatacgtgctcacatagatc 30254010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 62 - 149
Target Start/End: Original strand, 37713440 - 37713527
Alignment:
Q  62 aaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagctta 149  Q
    |||| |||| |||||||||||||||||||||||||||||| ||  |  ||||||||||  |||| | || |||||||| |||||||||    
T  37713440 aaatgtatattttttatgtcatttcatatttataagctagttccgcaactaattttacccaacattacaaattcaatttgctagctta 37713527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 21191203 - 21191277
Alignment:
Q  51 aaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaaca 125  Q
    ||||| ||| |||||||||||||||||||| ||| |||| ||||||  |||||||||  |||||||||| |||||    
T  21191203 aaacaataattaaatatataatttttatgttattccatacttataaattagctcaacctctaattttaccaaaca 21191277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 64 - 125
Target Start/End: Original strand, 50133274 - 50133335
Alignment:
Q  64 atatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaaca 125  Q
    ||||||| |||| ||||||||| ||||||||||||||| |||||  |||||||||| |||||    
T  50133274 atatatatttttgatgtcatttgatatttataagctagttcaacatctaattttaccaaaca 50133335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 109 - 157
Target Start/End: Original strand, 30070328 - 30070376
Alignment:
Q  109 gctaattttactaaacactccatattcaattagctagcttatcaactat 157  Q
    ||||||||||| ||||||| || |||||||||||||||||||| |||||    
T  30070328 gctaattttaccaaacactacaaattcaattagctagcttatccactat 30070376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 50 - 125
Target Start/End: Original strand, 12637716 - 12637791
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaaca 125  Q
    |||| ||||| ||| ||||| ||||||  |||||||||||||||||||| || | ||| ||||||||||| |||||    
T  12637716 taaatattaattaactatatcattttttagtcatttcatatttataagcaagttaaacagctaattttaccaaaca 12637791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 51 - 125
Target Start/End: Original strand, 27247463 - 27247537
Alignment:
Q  51 aaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaaca 125  Q
    ||||| ||| |||||||||||||||||||| ||| |||| ||||||  ||||||||   |||||||||| |||||    
T  27247463 aaacaataattaaatatataatttttatgttattccatacttataaattagctcaatctctaattttaccaaaca 27247537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 139
Target Start/End: Original strand, 41758653 - 41758718
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaatt 139  Q
    |||||||| |||||||||||||| | ||| |||||||||||||||||  |||||| || ||||||||    
T  41758653 ttttatgt-atttcatatttatacgttagttcaactgctaattttaccgaacactacaaattcaatt 41758718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 56269557 - 56269503
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    ||||||||||||| |  |||||||||||| | ||| |||||||||||||||||||    
T  56269557 ttttatgtcattttacgtttataagctagttgaaccgctaattttactaaacact 56269503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 138
Target Start/End: Original strand, 4149051 - 4149116
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaat 138  Q
    ||||||||||| ||||||||||||  |||||||||   ||||||||| ||||||| || |||||||    
T  4149051 ttttatgtcatctcatatttataaattagctcaaccagtaattttaccaaacactgcaaattcaat 4149116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 66 - 107
Target Start/End: Original strand, 25886112 - 25886153
Alignment:
Q  66 atataatttttatgtcatttcatatttataagctagctcaac 107  Q
    ||||| ||||||||||||||||||| |||||||||| |||||    
T  25886112 atatattttttatgtcatttcatatctataagctagttcaac 25886153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 73 - 126
Target Start/End: Original strand, 37338544 - 37338597
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacac 126  Q
    ||||||||||||| |||||||| || ||| ||||||||| ||||||| ||||||    
T  37338544 ttttatgtcattttatatttatcagttaggtcaactgctcattttaccaaacac 37338597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 61 - 138
Target Start/End: Original strand, 42617729 - 42617805
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaat 138  Q
    ||||||| | ||||| ||||||||||||||||||||  ||| ||||| | ||| ||||||||||||| || |||||||    
T  42617729 taaatattttattttcatgtcatttcatatttataaattagttcaaccgttaa-tttactaaacactacaaattcaat 42617805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 152
Target Start/End: Complemental strand, 6323920 - 6323840
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatca 152  Q
    ||||||||||||||||||||||| ||| || ||| |  |||||||||| ||||||| |  ||||||| | |||| ||||||    
T  6323920 tttttatgtcatttcatatttatcagcaagttcagccactaattttacaaaacactacgaattcaatcaactagtttatca 6323840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 23308782 - 23308719
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttac 119  Q
    |||||||||| ||||| ||| |||||||||| |||||||| || ||| || ||||||||||||||    
T  23308782 attaactaaacatata-tttgtatgtcattttatatttatcagttagttcgactgctaattttac 23308719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 100
Target Start/End: Complemental strand, 24418177 - 24418149
Alignment:
Q  72 tttttatgtcatttcatatttataagcta 100  Q
    |||||||||||||||||||||||||||||    
T  24418177 tttttatgtcatttcatatttataagcta 24418149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 93 - 149
Target Start/End: Complemental strand, 27611868 - 27611812
Alignment:
Q  93 ataagctagctcaactgctaattttactaaacactccatattcaattagctagctta 149  Q
    ||||| ||| ||||||||||||||||| ||||||| || ||||||| | ||||||||    
T  27611868 ataagttagttcaactgctaattttaccaaacactacaaattcaatcaactagctta 27611812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 39033634 - 39033718
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 157  Q
    |||||||||||||||||||| |||| ||| | ||| | ||||||||  ||||||| || ||||||| |||||  |||||| ||||    
T  39033634 ttttatgtcatttcatatttttaagttagtttaaccgataattttatcaaacactacaaattcaatcagctaatttatcatctat 39033718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 61 - 97
Target Start/End: Original strand, 39773815 - 39773851
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataag 97  Q
    |||||||||| |||||||||||||| |||||||||||    
T  39773815 taaatatatattttttatgtcattttatatttataag 39773851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 50; Significance: 3e-19; HSPs: 18)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 55 - 144
Target Start/End: Original strand, 17259587 - 17259676
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagcta 144  Q
    ||||| |||||||||  |||||||||||||||||| ||||||||||| ||||| |||||||||||||| |||| || ||||||| |||||    
T  17259587 attaattaaatatatcttttttatgtcatttcatacttataagctagttcaaccgctaattttactaaccactgcaaattcaatcagcta 17259676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 72 - 150
Target Start/End: Original strand, 31677291 - 31677369
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 150  Q
    |||| |||||||||||||||| |||||||| ||||| |||| |||||| |||||||  | ||||||| |||||||||||    
T  31677291 ttttgatgtcatttcatatttgtaagctagttcaaccgctagttttaccaaacactgtaaattcaatcagctagcttat 31677369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 6462339 - 6462239
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagctta 149  Q
    |||| ||||| ||||||||  |||| | ||||||||||||||||||| |||  | | | ||||||||||||||||||| || ||||||| ||||||||||    
T  6462339 taaatattaattaaatatagcatttgtctgtcatttcatatttataacctaa-tgagccgctaattttactaaacactacaaattcaatcagctagctta 6462241  T
Q  150 tc 151  Q
    ||    
T  6462240 tc 6462239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 84 - 128
Target Start/End: Complemental strand, 13838785 - 13838741
Alignment:
Q  84 ttcatatttataagctagctcaactgctaattttactaaacactc 128  Q
    |||||| ||||||||||| ||||||||||||||||||||||||||    
T  13838785 ttcataattataagctagttcaactgctaattttactaaacactc 13838741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 1621486 - 1621439
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttac 119  Q
    |||||||||||||||||||||||||||||  ||||| |||||||||||    
T  1621486 tttttatgtcatttcatatttataagctacttcaaccgctaattttac 1621439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 17902785 - 17902840
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    ||||||||||| | |||||||||||||||| |||||||||| |||||| |||||||    
T  17902785 tttttatgtcaatacatatttataagctagttcaactgctagttttaccaaacact 17902840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 72 - 151
Target Start/End: Original strand, 34640176 - 34640255
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    |||||||||||||||||||||||||||||    |||  |||||||||| ||||| | || ||||||| ||||||||||||    
T  34640176 tttttatgtcatttcatatttataagctacaataaccactaattttaccaaacattacaaattcaataagctagcttatc 34640255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 151
Target Start/End: Original strand, 2942055 - 2942145
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||||||| | ||||||||||||| ||||||||||| ||| |||||  |||||||||| |||| || || ||||||  | ||||||||||    
T  2942055 taaatatatcacttttatgtcattttatatttataagttagttcaaccactaattttaccaaaccctacaaattcaaccaactagcttatc 2942145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 283 - 341
Target Start/End: Original strand, 11237677 - 11237735
Alignment:
Q  283 ttctcgaattaacttgacctgtttgctctgctctattagaaagtttgccttagctatag 341  Q
    ||||| ||||||||||||||| ||||||| ||||||||||| |||| ||||| ||||||    
T  11237677 ttctcaaattaacttgacctggttgctctactctattagaatgtttaccttaactatag 11237735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 61 - 151
Target Start/End: Complemental strand, 31806673 - 31806583
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||||||| | ||||||||||||||||||||||||| ||| ||||    ||||||||| ||||| | || |||||||  |||||||||||    
T  31806673 taaatatatcacttttatgtcatttcatatttataagatagttcaatccttaattttaccaaacaatacaaattcaatctgctagcttatc 31806583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 62 - 144
Target Start/End: Complemental strand, 41892849 - 41892767
Alignment:
Q  62 aaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagcta 144  Q
    ||||||||| ||||||||  |||||||||||||||||||| | ||| | ||||| ||| ||||||| || ||||||| |||||    
T  41892849 aaatatatattttttatggtatttcatatttataagctagtttaaccgttaattataccaaacactacaaattcaatcagcta 41892767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 81 - 138
Target Start/End: Original strand, 32046916 - 32046973
Alignment:
Q  81 catttcatatttataagctagctcaactgctaattttactaaacactccatattcaat 138  Q
    ||||||||||||| ||||||| ||||| |||||| |||| |||||||||| |||||||    
T  32046916 catttcatatttaaaagctagttcaaccgctaatattaccaaacactccaaattcaat 32046973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 74 - 138
Target Start/End: Original strand, 28363539 - 28363603
Alignment:
Q  74 tttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaat 138  Q
    |||||||||||||||| |||||| |||| ||||| |||||| |||| ||||||| || |||||||    
T  28363539 tttatgtcatttcatacttataaactagttcaacagctaatattaccaaacactacaaattcaat 28363603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 55 - 94
Target Start/End: Original strand, 35785574 - 35785613
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttat 94  Q
    ||||| ||||||||| ||||||||||||||||||||||||    
T  35785574 attaaataaatatattatttttatgtcatttcatatttat 35785613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 147
Target Start/End: Complemental strand, 43315610 - 43315535
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagct 147  Q
    |||||||| ||||||||||||||||||||| |||||  ||||||||  | |||||| || ||||||| | ||||||    
T  43315610 tttttatgacatttcatatttataagctagttcaaccactaattttgatcaacactacaaattcaatcaactagct 43315535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 148
Target Start/End: Original strand, 9005331 - 9005401
Alignment:
Q  78 tgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagctt 148  Q
    |||||||||||| || |||||||  ||||||| ||||| ||||||||||| || ||||||| || ||||||    
T  9005331 tgtcatttcatacttttaagctacttcaactgttaattgtactaaacactacaaattcaatcagttagctt 9005401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 106
Target Start/End: Original strand, 22572689 - 22572723
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaa 106  Q
    |||||||||||||||||||||||||||||| ||||    
T  22572689 tttttatgtcatttcatatttataagctagttcaa 22572723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 32882865 - 32882893
Alignment:
Q  72 tttttatgtcatttcatatttataagcta 100  Q
    |||||||||||||||||||||||||||||    
T  32882865 tttttatgtcatttcatatttataagcta 32882893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 1e-18; HSPs: 16)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 55 - 127
Target Start/End: Complemental strand, 28249908 - 28249836
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||| |||||   ||||||||||| |||||    
T  28249908 attaactaaatatataatttttatgtcatttcatatttataagttagatcaaccattaattttactacacact 28249836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 50 - 157
Target Start/End: Original strand, 8752584 - 8752690
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagctta 149  Q
    |||| ||||| |||| |||| ||||||||||||||||||||||||||||||  |||| |||  ||||||| ||| ||| || |||||||||| |||||||    
T  8752584 taaatattaattaaacatatcatttttatgtcatttcatatttataagctaattcaaatgcagattttaccaaa-actacaaattcaattagttagctta 8752682  T
Q  150 tcaactat 157  Q
    ||||||||    
T  8752683 tcaactat 8752690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 151
Target Start/End: Complemental strand, 5946660 - 5946559
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagctta 149  Q
    |||| ||||| |||| ||||| |||||||||||||||||||||| ||||||  |||||  ||||||| ||||| |||| |||||||||| || |||||||    
T  5946660 taaatattaattaaacatatagtttttatgtcatttcatatttacaagctacttcaacaactaatttgactaagcactacatattcaatcagttagctta 5946561  T
Q  150 tc 151  Q
    ||    
T  5946560 tc 5946559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 77 - 151
Target Start/End: Complemental strand, 30804441 - 30804367
Alignment:
Q  77 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||||||||||| |||||| |||| ||||| ||||||||||| ||||||| || |||||||||| |||||||||    
T  30804441 atgtcatttcatacttataatctagttcaaccgctaattttacgaaacactacaaattcaattagttagcttatc 30804367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 42139523 - 42139577
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    |||||| |||||||||||||||||||||| ||||||||||||||||| |||||||    
T  42139523 ttttatatcatttcatatttataagctagttcaactgctaattttaccaaacact 42139577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 14477684 - 14477608
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    |||||||||||||||||||||| ||||||||||||||||||||||||| | | ||||| | |  ||||||||||||||    
T  14477684 taaacattaactaaatatataa-ttttatgtcatttcatatttataagtttgttcaaccgttcgttttactaaacact 14477608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 55 - 118
Target Start/End: Original strand, 18491947 - 18492010
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaatttta 118  Q
    ||||| |||||||||  |||||||||||||||||||| ||||| ||| ||||||||||||||||    
T  18491947 attaattaaatatatcttttttatgtcatttcatattaataagttagttcaactgctaatttta 18492010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 119
Target Start/End: Original strand, 27679228 - 27679275
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttac 119  Q
    |||||||||||||||||||||||||||||| ||||| |||||||||||    
T  27679228 tttttatgtcatttcatatttataagctagttcaaccgctaattttac 27679275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 77 - 141
Target Start/End: Original strand, 15967966 - 15968030
Alignment:
Q  77 atgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattag 141  Q
    ||||||||||||||||||||||||| ||||| ||||||||||| || |||| || ||| ||||||    
T  15967966 atgtcatttcatatttataagctagttcaaccgctaattttaccaagcactacaaattgaattag 15968030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 72 - 124
Target Start/End: Original strand, 21721917 - 21721969
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaac 124  Q
    |||||||||||||| ||||||||||||||  ||||||||||||||||| ||||    
T  21721917 tttttatgtcattttatatttataagctatttcaactgctaattttaccaaac 21721969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 72 - 138
Target Start/End: Original strand, 21938036 - 21938102
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaat 138  Q
    |||||||||||||| ||||||||||| ||  ||||| | ||||||||||||||||| || |||||||    
T  21938036 tttttatgtcattttatatttataagatatttcaaccgttaattttactaaacactgcaaattcaat 21938102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 72 - 144
Target Start/End: Original strand, 27863867 - 27863939
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagcta 144  Q
    ||||| |||||||||| |||||||||||| |||||| | ||||||||  ||||||| || ||||||| |||||    
T  27863867 tttttttgtcatttcacatttataagctacctcaaccggtaattttatcaaacactacaaattcaatcagcta 27863939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 79 - 123
Target Start/End: Complemental strand, 33651228 - 33651184
Alignment:
Q  79 gtcatttcatatttataagctagctcaactgctaattttactaaa 123  Q
    |||||||||||||| |||| ||| |||||||||||||||||||||    
T  33651228 gtcatttcatatttgtaagttagttcaactgctaattttactaaa 33651184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 151
Target Start/End: Complemental strand, 12238298 - 12238220
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    |||||||| ||||||||| |||||| ||  | ||||||||||||||| ||||||| || ||||||| |  |||||||||    
T  12238298 ttttatgttatttcatatatataagttaatttaactgctaattttacaaaacactacaaattcaatcaattagcttatc 12238220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 100
Target Start/End: Original strand, 4751783 - 4751811
Alignment:
Q  72 tttttatgtcatttcatatttataagcta 100  Q
    |||||||||||||||||||||||||||||    
T  4751783 tttttatgtcatttcatatttataagcta 4751811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 50 - 150
Target Start/End: Original strand, 9613733 - 9613833
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagctta 149  Q
    |||| ||||| |||| |||| ||||| ||||||||||||||||||||| ||| ||| |   | ||||||| ||||| |  | |||||||||| |||||||    
T  9613733 taaatattaattaaacatattattttcatgtcatttcatatttataagatagttcagccattgattttaccaaacaatataaattcaattagttagctta 9613832  T
Q  150 t 150  Q
    |    
T  9613833 t 9613833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 49; Significance: 1e-18; HSPs: 29)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 76 - 152
Target Start/End: Original strand, 32348407 - 32348483
Alignment:
Q  76 tatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatca 152  Q
    |||||||||||| ||||||||||||||||||| ||||||||||| ||||||| || ||||||| | |||||||||||    
T  32348407 tatgtcatttcaaatttataagctagctcaaccgctaattttaccaaacactacaaattcaatcaactagcttatca 32348483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 50 - 127
Target Start/End: Complemental strand, 22593599 - 22593522
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    |||| ||||| |||||||||| ||||||||||||||||||||||||||||||   ||||||||||||||  |||||||    
T  22593599 taaatattaattaaatatatattttttatgtcatttcatatttataagctagtcgaactgctaattttatcaaacact 22593522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 73 - 157
Target Start/End: Original strand, 3160987 - 3161071
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 157  Q
    ||||||||||||||||||||||| ||||| ||||  | ||||||||| ||||||| || ||||||| ||||||||||| ||||||    
T  3160987 ttttatgtcatttcatatttatatgctagttcaaacgttaattttaccaaacactacaaattcaatcagctagcttattaactat 3161071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 11337318 - 11337227
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatca 152  Q
    |||| |||| |||||||||||||||| |||| |||| |||| |||||||| |||||||| ||||||| || |||||||| ||||| ||||||    
T  11337318 taaaaatatcatttttatgtcatttcgtattaataaactagttcaactgcaaattttaccaaacactgcaaattcaattggctagtttatca 11337227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 61 - 152
Target Start/End: Complemental strand, 11495337 - 11495246
Alignment:
Q  61 taaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatca 152  Q
    |||| |||| |||||||||||||||| |||| |||| |||| |||||||| |||||||| ||||||| || |||||||| ||||| ||||||    
T  11495337 taaaaatatcatttttatgtcatttcgtattaataaactagttcaactgcaaattttaccaaacactgcaaattcaattggctagtttatca 11495246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 30173490 - 30173401
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaatt 139  Q
    |||| ||||| ||||||||| |||||||||||||||||||||||||| |||  ||||| ||||||||||  ||||| | || ||||||||    
T  30173490 taaagattaattaaatatattatttttatgtcatttcatatttataaactacttcaaccgctaattttaacaaacattacaaattcaatt 30173401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 50 - 138
Target Start/End: Complemental strand, 3949729 - 3949641
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaat 138  Q
    |||| |||||||||| ||||  |||||||||||||||||||||||||  ||| ||||  ||||||||||| ||||||| || |||||||    
T  3949729 taaatattaactaaacatatcttttttatgtcatttcatatttataaattagttcaaacgctaattttaccaaacactacaaattcaat 3949641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 28870541 - 28870462
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||||||| ||||||| |||||||||||| ||||||| ||||||||| |||||||  | ||||||| | ||||||||||    
T  28870541 tttttatgtaatttcatttttataagctagttcaactgttaattttaccaaacactaaaaattcaataaactagcttatc 28870462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 127
Target Start/End: Original strand, 35058682 - 35058737
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    |||||||||||||||||||||||||| ||| ||||| ||||||||||| |||||||    
T  35058682 tttttatgtcatttcatatttataaggtagttcaaccgctaattttaccaaacact 35058737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 72 - 150
Target Start/End: Complemental strand, 1714108 - 1714030
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 150  Q
    ||||||||||||||||||||||||| |||  ||||| | ||||||||| ||||||| || ||||||| || ||||||||    
T  1714108 tttttatgtcatttcatatttataaactacttcaacggttaattttaccaaacactacaaattcaatcagttagcttat 1714030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 76 - 157
Target Start/End: Complemental strand, 21516574 - 21516493
Alignment:
Q  76 tatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 157  Q
    |||||||||||||||||| ||||||  |||||  |||||||||| ||||||  || ||||||| |||||||||||| |||||    
T  21516574 tatgtcatttcatatttaaaagctatttcaaccactaattttaccaaacacaacaaattcaatcagctagcttatccactat 21516493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 64 - 125
Target Start/End: Complemental strand, 23908900 - 23908839
Alignment:
Q  64 atatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaaca 125  Q
    |||||| ||||||||||||||||||||||||||||||| |||||  ||||||| || |||||    
T  23908900 atatatcatttttatgtcatttcatatttataagctagttcaaccactaatttcaccaaaca 23908839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 118
Target Start/End: Original strand, 1415860 - 1415928
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaatttta 118  Q
    |||||||| | |||||||||  |||||||||||||||| ||||||||||||| | ||| ||||||||||    
T  1415860 taaacattcattaaatatatcttttttatgtcatttcacatttataagctagtttaaccgctaatttta 1415928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 50 - 150
Target Start/End: Complemental strand, 31117689 - 31117590
Alignment:
Q  50 taaacattaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagctta 149  Q
    |||| ||||| |||||||| | ||||| |||||||||||||||||| ||||  ||||  ||||||||||  ||||||| || ||||||| ||||||||||    
T  31117689 taaatattaattaaatatacatttttt-tgtcatttcatatttatatgctatttcaatcgctaattttatcaaacactacaaattcaatcagctagctta 31117591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 64 - 151
Target Start/End: Original strand, 7460242 - 7460328
Alignment:
Q  64 atatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||||| |||| |||||||||||||| |||||||||| | ||| ||||| ||||| ||||||| || ||||||| | ||||||||||    
T  7460242 atatatatttttcatgtcatttcatatatataagctagtttaaccgctaagtttac-aaacactacaaattcaatcatctagcttatc 7460328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 68 - 150
Target Start/End: Original strand, 40942413 - 40942495
Alignment:
Q  68 ataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 150  Q
    |||||||||||||||||| |||||| | || ||| ||||| ||||||||||| ||||| | || |||||||| ||||| ||||    
T  40942413 ataatttttatgtcattttatatttgtcagttagttcaaccgctaattttaccaaacaattcaaattcaatttgctagtttat 40942495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 154
Target Start/End: Original strand, 5923865 - 5923933
Alignment:
Q  86 catatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaac 154  Q
    |||||||||||||||| |||||   ||||||||| |||||||  | ||||||| |||||||||||||||    
T  5923865 catatttataagctagttcaaccattaattttaccaaacactaaaaattcaatcagctagcttatcaac 5923933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 84 - 144
Target Start/End: Original strand, 32602949 - 32603009
Alignment:
Q  84 ttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagcta 144  Q
    |||||||||||||||||  |||||  |||||||||||||||||| || ||||||| |||||    
T  32602949 ttcatatttataagctacttcaaccactaattttactaaacactacaaattcaatcagcta 32603009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 157
Target Start/End: Original strand, 28870864 - 28870946
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 157  Q
    ||||||||||||||| |||||||   |||| ||||  ||||||||||| ||||||| || | ||||||  ||||||||||||||||    
T  28870864 tttttatgtcatttcgtatttat---ctagttcaatagctaattttaccaaacactacaaaatcaattcactagcttatcaactat 28870946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 55 - 97
Target Start/End: Original strand, 15801269 - 15801311
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataag 97  Q
    ||||| ||||||||| | |||||||||||||||||||||||||    
T  15801269 attaattaaatatatcagttttatgtcatttcatatttataag 15801311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 83 - 141
Target Start/End: Complemental strand, 31795410 - 31795352
Alignment:
Q  83 tttcatatttataagctagctcaactgctaattttactaaacactccatattcaattag 141  Q
    ||||||||||||||||||| ||||| | || |||||| ||||||| || ||||||||||    
T  31795410 tttcatatttataagctagttcaaccgttagttttaccaaacactacaaattcaattag 31795352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 127
Target Start/End: Original strand, 34320066 - 34320120
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    ||||||||||||| |  |||||||||||| | ||||||||||||||| |||||||    
T  34320066 ttttatgtcattttacgtttataagctagttgaactgctaattttaccaaacact 34320120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 35272552 - 35272478
Alignment:
Q  78 tgtcatttcatatttat-aagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||||||||||||| | ||| ||  ||||| | ||||||||||||||||| || ||||||| ||||||||||||    
T  35272552 tgtcatttcatattttttaagatacttcaaccgataattttactaaacactacaaattcaatcagctagcttatc 35272478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 118
Target Start/End: Complemental strand, 40856677 - 40856631
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaatttta 118  Q
    ||||||| |||||||||||||||||| ||| ||||| ||||||||||    
T  40856677 tttttatatcatttcatatttataagttagttcaaccgctaatttta 40856631  T

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Target: chr1; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 77 - 130
Target Start/End: Complemental strand, 4372865 - 4372812
Alignment:
Q  77 atgtcatttcatatttataagctagctcaactgctaattttactaaacactcca 130  Q
    ||||||||||||||||||||| ||| ||||| |||||| |||  ||||||||||    
T  4372865 atgtcatttcatatttataagttagttcaaccgctaatcttagaaaacactcca 4372812  T

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Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 35926583 - 35926534
Alignment:
Q  78 tgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    |||||||||||| ||||||||||| |||||  |||||||||| |||||||    
T  35926583 tgtcatttcatacttataagctagttcaaccactaattttaccaaacact 35926534  T

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Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 130
Target Start/End: Complemental strand, 18346870 - 18346814
Alignment:
Q  74 tttatgtcatttcatatttataagctagctcaactgctaattttactaaacactcca 130  Q
    |||||||||||| |||||||| |||||| | |||||||| |||||  ||||||||||    
T  18346870 tttatgtcattttatatttatcagctagttgaactgctatttttatcaaacactcca 18346814  T

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Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 73 - 105
Target Start/End: Original strand, 36021204 - 36021236
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctca 105  Q
    |||||||||||||| ||||||||||||||||||    
T  36021204 ttttatgtcatttcgtatttataagctagctca 36021236  T

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Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 74 - 114
Target Start/End: Complemental strand, 36422802 - 36422762
Alignment:
Q  74 tttatgtcatttcatatttataagctagctcaactgctaat 114  Q
    ||||||||||||||||| || ||||||| ||||||||||||    
T  36422802 tttatgtcatttcatatgtaaaagctagttcaactgctaat 36422762  T

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Target: chr7 (Bit Score: 45; Significance: 2e-16; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 71 - 151
Target Start/End: Original strand, 2525285 - 2525365
Alignment:
Q  71 atttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    |||||||||  |||||||||||||||||||| ||| ||||||||||||| ||||| | || ||||||| ||||||||||||    
T  2525285 atttttatgcaatttcatatttataagctagttcagctgctaattttaccaaacaatacaaattcaatcagctagcttatc 2525365  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 72 - 147
Target Start/End: Original strand, 15050965 - 15051040
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagct 147  Q
    |||||||||||||||||| | ||||||||| |||||  |||||||||| |||||||| | ||||||| ||||||||    
T  15050965 tttttatgtcatttcatactcataagctagttcaaccactaattttaccaaacactctaaattcaatcagctagct 15051040  T

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Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 92 - 150
Target Start/End: Original strand, 15050624 - 15050682
Alignment:
Q  92 tataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 150  Q
    |||||| ||| ||||||||||||||||||||||||| || ||||||| |||||||||||    
T  15050624 tataagttagttcaactgctaattttactaaacactgcagattcaataagctagcttat 15050682  T

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Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 55 - 101
Target Start/End: Original strand, 42967867 - 42967913
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctag 101  Q
    ||||||||||||||| || ||||||||||||||||||||||||||||    
T  42967867 attaactaaatatattatctttatgtcatttcatatttataagctag 42967913  T

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Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 72 - 157
Target Start/End: Complemental strand, 13438391 - 13438306
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 157  Q
    |||||||||||||| ||||||||||| ||| | ||| |||||||| || ||||||| || ||| ||| |||||||| |||| ||||    
T  13438391 tttttatgtcattttatatttataagttagtttaaccgctaatttaaccaaacactacaaatttaataagctagctcatcagctat 13438306  T

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Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 71 - 127
Target Start/End: Complemental strand, 87221 - 87165
Alignment:
Q  71 atttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    ||||||||||||||||||||||| || |||  ||||| ||||||||||| |||||||    
T  87221 atttttatgtcatttcatatttacaatctaattcaaccgctaattttacaaaacact 87165  T

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Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 55 - 151
Target Start/End: Original strand, 31740563 - 31740658
Alignment:
Q  55 attaactaaatatataatttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatc 151  Q
    ||||| ||||||||| | |||||||| |||||||||||||||| ||  |||| |  ||||||||| ||||||| || ||||||| ||||| ||||||    
T  31740563 attaattaaatatattagttttatgttatttcatatttataagttaattcaa-tcgtaattttaccaaacactgcaaattcaataagctaacttatc 31740658  T

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Target: chr7; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 107
Target Start/End: Complemental strand, 36112732 - 36112697
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaac 107  Q
    |||||||||||||||||||||||||||||| |||||    
T  36112732 tttttatgtcatttcatatttataagctagttcaac 36112697  T

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Target: chr7; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 44235417 - 44235370
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttac 119  Q
    ||||||||||||||||||||||||| |||  ||||| |||||||||||    
T  44235417 tttttatgtcatttcatatttataaactacttcaaccgctaattttac 44235370  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 883879 - 883925
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaatttta 118  Q
    |||||||||||||||||||||||||||||  ||||| | ||||||||    
T  883879 tttttatgtcatttcatatttataagctacttcaaccgttaatttta 883925  T

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Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 1243208 - 1243254
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaatttta 118  Q
    |||||||||||||||||||||||||||||  ||||| | ||||||||    
T  1243208 tttttatgtcatttcatatttataagctacttcaaccgttaatttta 1243254  T

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Target: chr7; HSP #12
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 79 - 157
Target Start/End: Original strand, 3837088 - 3837161
Alignment:
Q  79 gtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttatcaactat 157  Q
    |||||| |||||||||||||||  ||||| ||||||||||| ||||||| ||     ||||| ||||||||||||||||    
T  3837088 gtcattacatatttataagctacttcaacggctaattttaccaaacactaca-----aattatctagcttatcaactat 3837161  T

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Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 72 - 136
Target Start/End: Complemental strand, 28175513 - 28175449
Alignment:
Q  72 tttttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattca 136  Q
    ||||||||||||||||||||| |||||||  ||||| ||||||| ||  ||||||| || |||||    
T  28175513 tttttatgtcatttcatatttgtaagctacttcaaccgctaattatatcaaacactacaaattca 28175449  T

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Target: scaffold0022 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 74 - 150
Target Start/End: Complemental strand, 84914 - 84838
Alignment:
Q  74 tttatgtcatttcatatttataagctagctcaactgctaattttactaaacactccatattcaattagctagcttat 150  Q
    ||||||||||||||||| |||||||||  ||||||||||||||||  ||| ||| || | ||||| |||||||||||    
T  84914 tttatgtcatttcatatctataagctacttcaactgctaattttaacaaatactacaaaatcaataagctagcttat 84838  T

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Target: scaffold0349 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 73 - 127
Target Start/End: Complemental strand, 9533 - 9479
Alignment:
Q  73 ttttatgtcatttcatatttataagctagctcaactgctaattttactaaacact 127  Q
    ||||||||||||| | ||||||||||||| | ||| ||||||||||| |||||||    
T  9533 ttttatgtcattttacatttataagctagttgaaccgctaattttaccaaacact 9479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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