View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_13 (Length: 587)
Name: NF0821_low_13
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 367; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 367; E-Value: 0
Query Start/End: Original strand, 81 - 491
Target Start/End: Original strand, 39023309 - 39023719
Alignment:
| Q |
81 |
agatatacatgcatttactaaaaatccatactgtataattttaacttaaacttaacattaaacacatcattaactacttgcatgcaattcatctaaaaaa |
180 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| | |||||||||||||||||||||||||||||||||||||| |
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| T |
39023309 |
agatatacatgcatttactaaaaatccataaggtataattttaacttaaaattaacatttagcacatcattaactacttgcatgcaattcatctaaaaaa |
39023408 |
T |
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| Q |
181 |
taagatgtgagattgaggctgaaggaagctatccactattactaattgcttggatgagactccaagccactccttcaactggtttgaagttccatatttt |
280 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39023409 |
taagatgtgagattgaggctgaaggaagctatccactattactaattgcttggatgagactccaagccactccttcaactggtttgaagttccatatttt |
39023508 |
T |
|
| Q |
281 |
ccaatccgtactggctgccagctcgtgccaaccaaaatttcgaaggcagaaaccaatgccagcacatctcacatcattaaaagttgatgcttcaagattg |
380 |
Q |
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|||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39023509 |
ccaatccgtactggctgccagctcgtctcaaccaaaattttgaaggcagaaaccaatgccagcacatctcacatcattaaaagttgacgcttcaagattg |
39023608 |
T |
|
| Q |
381 |
catttcacatattcatctgttgaagcagtccactgtgccattgctggtaatgctgcgaaactcgatgacagtcttgatgcaactggtctgttgttaaaac |
480 |
Q |
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||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39023609 |
catttcacatattcatctgttgaagtagtccaccgtgccattgctggtaatgctgcgaaactcgatgacagtcttgatgcaactggtctgttgttaaaac |
39023708 |
T |
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| Q |
481 |
accctagatac |
491 |
Q |
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| T |
39023709 |
accctagatac |
39023719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 30 - 97
Target Start/End: Original strand, 39023105 - 39023172
Alignment:
| Q |
30 |
aagagagggaacatttactatttggagatcgcataacaaaaacaatttgatagatatacatgcattta |
97 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39023105 |
aagagagggaacatttactatttggagatcgcataacaaaaacaatttgatagatatacatgcattta |
39023172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 57; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 517 - 581
Target Start/End: Complemental strand, 50468456 - 50468392
Alignment:
| Q |
517 |
aagcagtctgattttaatttctaacgtgcgaacttagtaaattaaaaggaaaaaagtgaataaaa |
581 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50468456 |
aagcaatctgactttaatttctaacgtgcgaacttagtaaattaaaaggaaaaaagtgaataaaa |
50468392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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