View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_18 (Length: 564)
Name: NF0821_low_18
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 530; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 530; E-Value: 0
Query Start/End: Original strand, 1 - 554
Target Start/End: Original strand, 38304337 - 38304890
Alignment:
| Q |
1 |
tccatggtttcttccacccatcttcaccacacactcctctttcctcacaccttgtcaatgcttacgttaactttggttcccaccattacgcttttctctc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38304337 |
tccatggtttcttccacccatcttcaccacacactcctctttgctcacaccttgtcaatgcttacgttaactttggttcccaccattacgcttttctctt |
38304436 |
T |
|
| Q |
101 |
cttctctctactcccccacagatccaaccttgcttggaacgcaattctcagagctcttattggctctaacaacttcactctttccattcagttttatcac |
200 |
Q |
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|||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38304437 |
cttctctcaactcccccacaaatccaaccttgcttggaacgcaattctcagagctcttattggctctaacaacttcactctttccattcagttttatcac |
38304536 |
T |
|
| Q |
201 |
tttatgcttagacatggttttgcaccagataattacacatacccacttgtgctaaaagcttgttcttcgttgcaagctattgaaattggaagatgggttt |
300 |
Q |
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| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38304537 |
tctatgcttagacatggttttgcaccagataattacacatacccacttgtgctaaaagcttgttcttcgttgcaagctattgaaattggaagatgggttt |
38304636 |
T |
|
| Q |
301 |
atcataatattctgattaatgaggaaaaggctaatctttttgtccagtgtgctttgattgatatgtttgtaaaatgtgaaagtttggaagatgcgcgtaa |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38304637 |
atcataatattctgattaatgaggaaaaggctaatctttttgtccagtgtgctttgattgatatgtttgtaaaatgtgaaagtttggaagatgcgcgtaa |
38304736 |
T |
|
| Q |
401 |
ggtgtttgatgaaatgaatgttagagatttggcgacttggactgcgttgatttgtgggaatgtgtggaatggtgaatgggatgaagcggttttgttgttt |
500 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38304737 |
ggtgtttgatgaaatgaatgtgagagatttggcgacttggactgcgttgatttgtgggaatgtgtggaatggtgaatgggatgaagcggttttgttgttt |
38304836 |
T |
|
| Q |
501 |
aggaagatgagattggaaggtttgaaggctgattcggttattgtggcgtctgtg |
554 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38304837 |
aggaagatgagattggaaggtttgaaggctgattcggttattgtggcgtctgtg |
38304890 |
T |
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