View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0821_low_2 (Length: 997)
Name: NF0821_low_2
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_2 |
 | |
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Alignment Details
Target: chr3 (Bit Score: 882; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 882; E-Value: 0
Query Start/End: Original strand, 82 - 987
Target Start/End: Complemental strand, 51805668 - 51804763
Alignment:
| Q |
82 |
aatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagcttgaactttactataactacttccttgttggcagcatccctg |
181 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805668 |
aatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagcttgaactttactataactacttccttgttggcagcatccctg |
51805569 |
T |
|
| Q |
182 |
aagagcttggaaatttaacagaacttgtcgatttagatatgtcggtaaacaaattaactggaacaatcccttcttctgtttgtaaacttccaaagcttca |
281 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805568 |
aagagcttggaaatttaacagaacttgtcgatttagatatgtcggtaaacaagttaactggaacaatcccttcttctgtttgtaaacttccaaagcttca |
51805469 |
T |
|
| Q |
282 |
ggttctccaattctacaataacagtctcacaggtgaaattccaaaatcaattgaaaactcaaaaacacttagaatattgtcactttacgacaatttctta |
381 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805468 |
ggttctccaattctacaataacagtctcacaggtgaaattccaaaatcaattgaaaactcaaaaacacttagaatattgtcactttacgacaatttctta |
51805369 |
T |
|
| Q |
382 |
agtggacacgttcctgcgaaactaggacaatcctccggaatggttgttcttgatttgtccgaaaacaagttgtctggccctttgccagaacatgtctgtc |
481 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805368 |
agtggacacgttcctgcgaaactaggacaatcctccggaatggttgttcttgatttgtccgaaaacaagttgtctggccctttgccagaacatgtctgtc |
51805269 |
T |
|
| Q |
482 |
aaggaggtaaactgttatattttcttgttttggataactttttctctggtgttataccagaaagttattcaaattgcatgtttctgttaaggtttcgtgt |
581 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51805268 |
aaggaggtaaactgttatattttcttgttttggataactttttctctggtgttataccagaaagttattcaaattgcatgtttctgttaaggtttcgtgt |
51805169 |
T |
|
| Q |
582 |
cagtaataaccgtttggaaggttctgttccaaaaggactcttgagtttaccacatgtttcaatcattgatttgagcagtaacaatctgactggtccgatt |
681 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||| ||||||||| |
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|
| T |
51805168 |
cagtaataaccgtttggaaggttctgttccaaaaggactcttgagtttatcacatgtttcaatcattgatttgagcagcaacaatctgaccggtccgatt |
51805069 |
T |
|
| Q |
682 |
cccgagatcaacggaaattctagaaacttgtctgagcttttccttcagaggaacaagatttcaggacaattaacaccaacaatctctagagcttataacc |
781 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||| |
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|
| T |
51805068 |
cccgagatcaacggaaattctagaaacttgtctgagcttttccttcagaggaacaagatttcaggacaaataacaccaacaatctctagtgcttataacc |
51804969 |
T |
|
| Q |
782 |
ttgtcaaaattgatttcagttataactttctttctggtccaattccttctgagattggtaaccttagaaagcttaacttgcttatgctacaagcaaacaa |
881 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51804968 |
ttgtcaaaattgatttcagttataactttctttctggtccaattccttctgagattggtaaccttagaaagcttaacttgcttatgctacaagcaaacaa |
51804869 |
T |
|
| Q |
882 |
gctgaactcttctattcctgattcattctcttccttggaatcactcaaccttctagatctttccagtaatctcttaaccggaaacatccctgaaagcctc |
981 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
51804868 |
gctgaactcttctattcctgattcattctcttccttggaatcactcaaccttctagatctttccagtaatctcttaaccggaaacatccctgaaagcctc |
51804769 |
T |
|
| Q |
982 |
tctgtg |
987 |
Q |
| |
|
|||||| |
|
|
| T |
51804768 |
tctgtg |
51804763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 695 - 733
Target Start/End: Original strand, 7423196 - 7423234
Alignment:
| Q |
695 |
gaaattctagaaacttgtctgagcttttccttcagagga |
733 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||||| |
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|
| T |
7423196 |
gaaattctagaaacttgtctgaacttttccatcagagga |
7423234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 4e-22; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 4e-22
Query Start/End: Original strand, 739 - 885
Target Start/End: Original strand, 20017733 - 20017879
Alignment:
| Q |
739 |
atttcaggacaattaacaccaacaatctctagagcttataaccttgtcaaaattgatttcagttataactttctttctggtccaattccttctgagattg |
838 |
Q |
| |
|
|||||| |||| |||| || ||||||||| ||||| || ||||||| ||||||||||||||||||| ||||| | ||||||||| ||||| | |||| |
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| T |
20017733 |
atttcaagacatataactccgacaatctcttgagctattagccttgtcgaaattgatttcagttataaatttctctatggtccaatcccttcataaattg |
20017832 |
T |
|
| Q |
839 |
gtaaccttagaaagcttaacttgcttatgctacaagcaaacaagctg |
885 |
Q |
| |
|
||||||||||||| ||||| |||||| || |||||| ||||||||| |
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|
| T |
20017833 |
gtaaccttagaaaacttaatttgcttgtgttacaagggaacaagctg |
20017879 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000006
Query Start/End: Original strand, 82 - 156
Target Start/End: Original strand, 20017396 - 20017470
Alignment:
| Q |
82 |
aatttcctcacaggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagcttgaactttactataac |
156 |
Q |
| |
|
||||||||| || |||||||||| ||| |||||||||||||||||||||||||||||||||| || ||||||| |
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|
| T |
20017396 |
aatttcctcgcaagtcaaattccttcagagcttggattgttgaaaaacttgcaacagcttgaacattgctataac |
20017470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 573 - 636
Target Start/End: Original strand, 20017589 - 20017652
Alignment:
| Q |
573 |
gtttcgtgtcagtaataaccgtttggaaggttctgttccaaaaggactcttgagtttaccacat |
636 |
Q |
| |
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||||||| ||||||| |||||||| ||||||| |||||||| ||||||| |||||||||||| |
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|
| T |
20017589 |
gtttcgtatcagtaacaaccgtttagaaggtttggttccaaagtgactcttaagtttaccacat |
20017652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 924 - 987
Target Start/End: Original strand, 20017900 - 20017963
Alignment:
| Q |
924 |
actcaaccttctagatctttccagtaatctcttaaccggaaacatccctgaaagcctctctgtg |
987 |
Q |
| |
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|||||||||||| |||||||||| ||||||||||| | |||||||| |||||||||||||| |
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|
| T |
20017900 |
actcaaccttcttgatctttccaacaatctcttaactgagaacatccccaaaagcctctctgtg |
20017963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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