View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_low_21 (Length: 506)

Name: NF0821_low_21
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_low_21
NF0821_low_21
[»] chr1 (1 HSPs)
chr1 (93-498)||(35484749-35485151)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-162; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 93 - 498
Target Start/End: Original strand, 35484749 - 35485151
Alignment:
Q  93 ggtgggtggggttggagagcataatgagcgagctggaatccgacttgtataaggtgatacctacgactcaatattatttattataccggttcaaagcccc 192  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    |||||||||||||||||||    
T  35484749 ggtgggtggggttggagagcataatgagcgagctggaatccgacttgtataaggtgatacctccgactcaatattat----tataccggttcaaagcccc 35484844  T
Q  193 catggccagccctcaacaattctgatgactgatgagcccccaaaacaaggtgagccccgagattttggtttgcacatgcgagatatagctttatttgtat 292  Q
     | ||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  35484845 taaggccagccctcaataattctgatgactgacgagcccccaaaacaaggtgagccccgagattttggtttgcacatgcgagttatagctttagttgtat 35484944  T
Q  293 ttgtttctctcacgtataga-nnnnnnnnactattttgagtcgacgtgatttctgcaaccatgctccaattatctcgtgtcagtttgaagctcccaagca 391  Q
    ||||||||||||||||||||         | |||||||||  |||||||||||| ||| ||||||||||||||||||||||| |||||||||||||||||    
T  35484945 ttgtttctctcacgtatagatttttttttagtattttgaggtgacgtgatttctacaatcatgctccaattatctcgtgtcaatttgaagctcccaagca 35485044  T
Q  392 tgagacttgaaagggcgaattcacgccttttagccaacatttgcttttcggtttctgattgacggttagatgttatcgtatctcgtttaagcacgtgttt 491  Q
    ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||    
T  35485045 tgagatttgaaagggcgaattcacaccttttagccaacatttgcttttcggtttctgattgacggctagatgttatcgtatctcgtttaagcacgtgctt 35485144  T
Q  492 tcttttc 498  Q
    |||||||    
T  35485145 tcttttc 35485151  T

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