View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_22 (Length: 488)
Name: NF0821_low_22
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_22 |
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Alignment Details
Target: chr5 (Bit Score: 445; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 445; E-Value: 0
Query Start/End: Original strand, 30 - 478
Target Start/End: Original strand, 42215218 - 42215666
Alignment:
| Q |
30 |
accacctgaaatttcaaactgcagttctttgattcagctggaagttgacaacaatgctattactggtgagattccttctgttattggcaacttgagaagc |
129 |
Q |
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| T |
42215218 |
accacctgaaatttcaaactgcagttctttgattcagctggaagttgacaacaatgctattactggtgagattccttctgttattggcaacttgagaaac |
42215317 |
T |
|
| Q |
130 |
ttgactctcttctttgcatggaagaacaagctaacaggaaaaatcccaaatagtctttcagagtgtcaaaatcttcaggcacttgatctttcatacaaca |
229 |
Q |
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| T |
42215318 |
ttgactctcttctttgcatggaagaacaagctaacaggaaaaatcccaaatagtctttcagagtgtcaaaatcttcaggcacttgatctttcatacaaca |
42215417 |
T |
|
| Q |
230 |
acctaactggttcgataccaaaacaactatttgtgttgaggaatctaactcagcttatgcttatttccaatgatttggaaggattaataccacctgatat |
329 |
Q |
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| T |
42215418 |
acctaactggttcgataccaaaacaactatttgtgttgaggaatctaactcagcttatgcttatttccaatgatttggaaggattaataccacctgatat |
42215517 |
T |
|
| Q |
330 |
aggtaactgcacaagtctctacagattgaggttaaatcagaatagattggttggtaccattccatctgaaattgccaacttgaagaacttgaattttttg |
429 |
Q |
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| T |
42215518 |
aggtaactgcacaagtctctacagattgaggttaaatcagaatagattggttggtaccattccatctgaaattgccaacttgaagaacttgaattttttg |
42215617 |
T |
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| Q |
430 |
gacttgcactacaatcatcttgtaggggagattccatctcagttctctg |
478 |
Q |
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| T |
42215618 |
gacttgcactacaatcatcttgtaggggagattccatctcagttctctg |
42215666 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 122; Significance: 2e-62; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 34 - 343
Target Start/End: Original strand, 24156643 - 24156952
Alignment:
| Q |
34 |
cctgaaatttcaaactgcagttctttgattcagctggaagttgacaacaatgctattactggtgagattccttctgttattggcaacttgagaagcttga |
133 |
Q |
| |
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||||| |||||| | |||| |||||||| ||| || ||| |||||||||||||| | ||||||||||||||| || |||||||||| ||||||| ||||| |
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| T |
24156643 |
cctgagatttcacattgcacttctttgactcaacttgaaattgacaacaatgctctcactggtgagattcctcctcttattggcaatttgagaaacttga |
24156742 |
T |
|
| Q |
134 |
ctctcttctttgcatggaagaacaagctaacaggaaaaatcccaaatagtctttcagagtgtcaaaatcttcaggcacttgatctttcatacaacaacct |
233 |
Q |
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| | |||||||||||| |||||||| ||||||||||||||||| ||||||||||||| |||||| | |||||| ||||||||||||||||||| || | |
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| T |
24156743 |
atttgttctttgcatggcagaacaagttaacaggaaaaatcccagatagtctttcagattgtcaagaacttcagtcacttgatctttcatacaataattt |
24156842 |
T |
|
| Q |
234 |
aactggttcgataccaaaacaactatttgtgttgaggaatctaactcagcttatgcttatttccaatgatttggaaggattaataccacctgatataggt |
333 |
Q |
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| |||| | ||||||||| ||| ||| ||||||||||| || | ||| |||||||||||||||||||| ||| || ||||||||||||||||| |
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| T |
24156843 |
gattggtccaataccaaaaacactttttaatttgaggaatctcacaaaacttttgcttatttccaatgatttgtcaggctttataccacctgatatagga |
24156942 |
T |
|
| Q |
334 |
aactgcacaa |
343 |
Q |
| |
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|||||||||| |
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|
| T |
24156943 |
aactgcacaa |
24156952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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