View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_24 (Length: 473)
Name: NF0821_low_24
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 389; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 389; E-Value: 0
Query Start/End: Original strand, 15 - 455
Target Start/End: Complemental strand, 11984254 - 11983814
Alignment:
| Q |
15 |
gagacctttcaaatattttatccattgcatgtaattaagatagatattttagcnnnnnnnngcacgtgtgggagtttgttggtaagccttacatttagat |
114 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||| ||||||||||||||| || |
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| T |
11984254 |
gagacctttcaaatattttatccattgcatgtaattaagatagatattttagcaaaaaagagcacgtgtgtgagtttgttgctaagccttacatttaaat |
11984155 |
T |
|
| Q |
115 |
ttaaatcagattagatacgaaccttgctcaatatctggggtggcttctaactccttgccttttttgttgcacaaatgcttccctgcctcaatattttctt |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||| |
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| T |
11984154 |
ttaaatcagattagatacgaaccttgctcaatatctggggtggcttctaactccttgccttttttgttgctcaaatgcttccctgcctcattattttctt |
11984055 |
T |
|
| Q |
215 |
ccagtgaagaagtctcacgaacaaagtcccacaaacctttccccatcagataatttgtcataaaaacactccatctttcgtagttgtcagaggtaagtac |
314 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11984054 |
ccagtgaagaagtctcactaacaaagtcccacaaacctttccccatcagataatttgtcataaaaacactccatctttcgtagttgtcagaggtaagtac |
11983955 |
T |
|
| Q |
315 |
ttcaggaactattccaacggaggcaacactcgtggctttcattttattgcctcttcaggaactatttgagagttggaaatttgcacgttaacgtgaactt |
414 |
Q |
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| T |
11983954 |
ttcaggaactattccaacggaggcaacactcgtggctttcattttattgcctcttgaggaactatttgagagttggaaatttgcacgttaacgtgaactt |
11983855 |
T |
|
| Q |
415 |
gggatctttgtcaaaaatagaaagtgaacttgggatccaat |
455 |
Q |
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| T |
11983854 |
gggatctttgtcaaaaatagaaagtgaacttgggatccaat |
11983814 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 235 - 455
Target Start/End: Complemental strand, 12050098 - 12049875
Alignment:
| Q |
235 |
acaaagtcccacaaacctttccccatcagataatttgtcataaaaacactccatctttcgtagttgtcagaggta---agtacttcaggaactattccaa |
331 |
Q |
| |
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|||| |||||||| | ||| ||||| |||||||||| ||| || | |||||||||||| |||||||||||| | | |||||||||||||||||||||| |
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| T |
12050098 |
acaatgtcccacagatcttgccccaacagataatttttcacaatagcactccatcttttgtagttgtcagaagaagtgagtacttcaggaactattccaa |
12049999 |
T |
|
| Q |
332 |
cggaggcaacactcgtggctttcattttattgcctcttcaggaactatttgagagttggaaatttgcacgttaacgtgaacttgggatctttgtcaaaaa |
431 |
Q |
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| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12049998 |
cagaggcaacactcgtggctttcattttattgcctcttgaggaactatttgagagttggaactttgcacgttaacgtgaacttgggatctttgtcaaaaa |
12049899 |
T |
|
| Q |
432 |
tagaaagtgaacttgggatccaat |
455 |
Q |
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|||||||||||||||||||||||| |
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| T |
12049898 |
tagaaagtgaacttgggatccaat |
12049875 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 81; E-Value: 6e-38
Query Start/End: Original strand, 122 - 361
Target Start/End: Original strand, 12097411 - 12097662
Alignment:
| Q |
122 |
agattagatacgaaccttgctcaatatctggggtggcttctaactccttgccttttttgttgcacaaatgcttccctgcctcaatattttcttccagtga |
221 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||| ||||||||||| ||| ||| ||| ||||||| | |
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| T |
12097411 |
agattagatacgaaccttgctcaatatctggagtggcttctaactttttgtcttttttgttgctcaaatgcttccttgcttcagaattctcttccaagaa |
12097510 |
T |
|
| Q |
222 |
aga------agtctcacga---acaaagtcccacaaacctttccccatcagataatttgtcataaaaacactccatctttcgtagttgtcagaggtaagt |
312 |
Q |
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|| || |||| | | || ||||||| ||||| |||||||||||||||| |||||| ||||||||||||||| ||||| ||| |||| ||| |
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| T |
12097511 |
agcctcagcagaatcaccactgataacatcccacagaccttgccccatcagataatttttcataagaacactccatctttcatagttatcaaaggtcagt |
12097610 |
T |
|
| Q |
313 |
acttcaggaactattccaac---ggaggcaacactcgtggctttcattttat |
361 |
Q |
| |
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|||||||||||||||||||| ||||| ||||||||||| ||||||||||| |
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| T |
12097611 |
acttcaggaactattccaaccgaggagggaacactcgtggatttcattttat |
12097662 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 235 - 385
Target Start/End: Complemental strand, 12047367 - 12047220
Alignment:
| Q |
235 |
acaaagtcccacaaacctttccccatcagataatttgtcataaaaacactccatctttcgtagttgtcagaggtaagtacttcaggaactattccaacgg |
334 |
Q |
| |
|
|||| |||||| | ||||| | ||| |||||||| | ||||||||||||||||| |||||||||||| |||| ||||||||||||||||||| ||| | |
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| T |
12047367 |
acaacgtcccaaagaccttgcaccaacagataatctttcataaaaacactccat---tcgtagttgtcaaaggtgagtacttcaggaactattctaacag |
12047271 |
T |
|
| Q |
335 |
aggcaacactcgtggctttcattttattgcctcttcaggaactatttgaga |
385 |
Q |
| |
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|||||||||||||||||||||||||||||| ||| |||||||| |||||| |
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| T |
12047270 |
aggcaacactcgtggctttcattttattgcttctagaggaactaattgaga |
12047220 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 69; E-Value: 9e-31
Query Start/End: Original strand, 241 - 360
Target Start/End: Original strand, 12116873 - 12116995
Alignment:
| Q |
241 |
tcccacaaacctttccccatcagataatttgtcataaaaacactccatctttcgtagttgtcagaggtaagtacttcaggaactattccaac---ggagg |
337 |
Q |
| |
|
||||||| ||||| |||||||||||||||| |||||| ||||||||||||||| ||||| ||| |||| ||||||||||||||||||||||| ||||| |
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|
| T |
12116873 |
tcccacagaccttgccccatcagataatttttcataagaacactccatctttcatagttatcaaaggtcagtacttcaggaactattccaaccgaggagg |
12116972 |
T |
|
| Q |
338 |
caacactcgtggctttcatttta |
360 |
Q |
| |
|
||||||||||| |||||||||| |
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| T |
12116973 |
gaacactcgtggatttcatttta |
12116995 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 122 - 171
Target Start/End: Original strand, 12110555 - 12110604
Alignment:
| Q |
122 |
agattagatacgaaccttgctcaatatctggggtggcttctaactccttg |
171 |
Q |
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||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
12110555 |
agattagatacaaaccttgctcaatatctggggtggcttctaactccttg |
12110604 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 126 - 195
Target Start/End: Original strand, 12116749 - 12116818
Alignment:
| Q |
126 |
tagatacgaaccttgctcaatatctggggtggcttctaactccttgccttttttgttgcacaaatgcttc |
195 |
Q |
| |
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||||||| |||||||||||||||||||||||||||| |||| |||||||||||||||| ||| |||||| |
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|
| T |
12116749 |
tagatactaaccttgctcaatatctggggtggcttcaaactttttgccttttttgttgctcaagtgcttc |
12116818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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