View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_27 (Length: 434)
Name: NF0821_low_27
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 131 - 339
Target Start/End: Complemental strand, 36876596 - 36876388
Alignment:
| Q |
131 |
agtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggtta |
230 |
Q |
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| T |
36876596 |
agtttccccaaaacaataaccggtaatggctacgacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggtta |
36876497 |
T |
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| Q |
231 |
atttctctggtaatttctacattaatgactcgttgttttatgaactgtgagctttccacgtgctggttagtgagcttttagaaggttaatttctacttta |
330 |
Q |
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| T |
36876496 |
atttctctggtaatttctacattaatgactcgttgttttatgaactgtgatctttccacgtgctggttagtgagcttttagaaggttaatttctacttta |
36876397 |
T |
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| Q |
331 |
atctctctg |
339 |
Q |
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||||||||| |
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| T |
36876396 |
atctctctg |
36876388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 164 - 261
Target Start/End: Complemental strand, 33397486 - 33397389
Alignment:
| Q |
164 |
gacactgacacttataataatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactc |
261 |
Q |
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| T |
33397486 |
gacagtgacaattataataatgctttgaagcttctcactcaaaagctttcaaaactccgcaaggttaatctctctggtcatttctacgttaatgactc |
33397389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 182 - 269
Target Start/End: Original strand, 27004896 - 27004983
Alignment:
| Q |
182 |
aatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactcgttgtttt |
269 |
Q |
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| T |
27004896 |
aatgctctacagcttcttactcaaaagctttcaaaactccgcaatgttaatctctctggtcattcctactttaatgactctttgtttt |
27004983 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 182 - 249
Target Start/End: Original strand, 33093052 - 33093119
Alignment:
| Q |
182 |
aatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaatttctctggtaatttcta |
249 |
Q |
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|||||| ||||| ||||| |||||| ||||| |||||| |||||||||||| |||| ||||||||||| |
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| T |
33093052 |
aatgctttaaaggttcttgctcaaaagcttttaaaactccgcaaggttaatctctcaggtaatttcta |
33093119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 182 - 232
Target Start/End: Original strand, 37579955 - 37580005
Alignment:
| Q |
182 |
aatgctctaaagcttcttactcaaaggctttcaaaacttcgcaaggttaat |
232 |
Q |
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| T |
37579955 |
aatgctctaaaggttcttactcaaaagctttcaaaactctgcaaggttaat |
37580005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 206 - 269
Target Start/End: Original strand, 33708171 - 33708234
Alignment:
| Q |
206 |
aggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactcgttgtttt |
269 |
Q |
| |
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|||||||||||||| || ||||||||| |||| ||||||| |||| | |||||||| ||||||| |
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| T |
33708171 |
aggctttcaaaactccgtaaggttaatctctccggtaattcctacgtaaatgactcattgtttt |
33708234 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 269
Target Start/End: Original strand, 33714038 - 33714100
Alignment:
| Q |
207 |
ggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactcgttgtttt |
269 |
Q |
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|||||||| |||| || ||||||||| |||||||||||| ||| | |||||||||||||||| |
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| T |
33714038 |
ggctttcagaactccgtaaggttaatctctctggtaattcctatgtaaatgactcgttgtttt |
33714100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 4e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 189 - 279
Target Start/End: Original strand, 18723544 - 18723634
Alignment:
| Q |
189 |
taaagcttcttactcaaaggctttcaaaacttcgcaaggttaatttctctggtaatttctacattaatgactcgttgttttatgaactgtg |
279 |
Q |
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||||| ||||||||||||||||||||||||| ||||| |||||| | ||||||||| ||||||||||||| || ||||||| | ||||||| |
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| T |
18723544 |
taaaggttcttactcaaaggctttcaaaactccgcaaagttaatctttctggtaatatctacattaatgattcattgttttttcaactgtg |
18723634 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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