View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_low_28 (Length: 433)

Name: NF0821_low_28
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_low_28
NF0821_low_28
[»] chr2 (3 HSPs)
chr2 (16-424)||(36648115-36648521)
chr2 (16-166)||(36614454-36614604)
chr2 (280-424)||(36614600-36614742)
[»] chr8 (5 HSPs)
chr8 (16-166)||(2188838-2188988)
chr8 (156-220)||(36361732-36361796)
chr8 (85-155)||(36361828-36361898)
chr8 (218-286)||(36361563-36361631)
chr8 (280-333)||(2188789-2188842)
[»] chr3 (4 HSPs)
chr3 (159-288)||(3067835-3067964)
chr3 (81-151)||(3068003-3068073)
chr3 (16-79)||(40223928-40223991)
chr3 (161-207)||(7615867-7615913)
[»] chr5 (4 HSPs)
chr5 (283-402)||(37851058-37851169)
chr5 (286-377)||(37832230-37832315)
chr5 (283-377)||(37837718-37837806)
chr5 (287-364)||(37845214-37845285)
[»] chr7 (1 HSPs)
chr7 (283-372)||(36866399-36866482)
[»] scaffold0565 (1 HSPs)
scaffold0565 (218-280)||(3761-3823)


Alignment Details
Target: chr2 (Bit Score: 366; Significance: 0; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 16 - 424
Target Start/End: Original strand, 36648115 - 36648521
Alignment:
Q  16 catcatcaatagttgaggttgagaactttgccaagggccgagtgtagagtaatcctagtagaaaatcaaatggcataacatgtgtgcaagaaatcaattc 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  36648115 catcatcaatagatgaggttgagaactttgccaagggccgagtgtagagtaatcctagtagaaaagcaaatggcataacatgtgtgcaagaaatcaattc 36648214  T
Q  116 agcaaaccaaatattcaacaacaaattgaaaggtcttgttaagttatctacgtaaattcttatggtatttttcaagatattataagcaacccttcagctt 215  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  36648215 agcaaaccaaatattcaacaacaaattgaaaggtcttgttaagttatctacgtaaattcttatggtatttttcaagatattataagtaacccttcagctt 36648314  T
Q  216 atggttttagtgttacaaatgttggatgccgtggagtaggaaggaacaatggtcaaattacatgtctaccaatagtgcaccgagacattaaaccaaagaa 315  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36648315 atggttttagtgttataaatgttggatgccgtggagtaggaaggaacaatggtcaaattacatgtctaccaatagtgcaccgagacattaaaccaaagaa 36648414  T
Q  316 catacttgtggttgtggatgacaatatggagcctattatagctgattttggcactgcactatatgcaagaagcagtttgaggattctgataaatttcata 415  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||  || |||||||||||||||||||||||||| |||||||||    
T  36648415 catacttgtggttgtggatgacaatatggagcatattatagctgattttggcactgcac--tacgcaagaagcagtttgaggattctgattaatttcata 36648512  T
Q  416 ggttccata 424  Q
    |||| ||||    
T  36648513 ggtttcata 36648521  T

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Target: chr2; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 16 - 166
Target Start/End: Original strand, 36614454 - 36614604
Alignment:
Q  16 catcatcaatagttgaggttgagaactttgccaagggccgagtgtagagtaatcctagtagaaaatcaaatggcataacatgtgtgcaagaaatcaattc 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  36614454 catcatcaatagatgaggttgagaactttgccaagggccgagtgtagagtaatcctaatagaaaagcaaatggcataacatgtgtgcaagaaatcaattc 36614553  T
Q  116 agcaaaccaaatattcaacaacaaattgaaaggtcttgttaagttatctac 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36614554 agcaaaccaaatattcaacaacaaattgaaaggtcttgttaagttatctac 36614604  T

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Target: chr2; HSP #3
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 280 - 424
Target Start/End: Original strand, 36614600 - 36614742
Alignment:
Q  280 tctaccaatagtgcaccgagacattaaaccaaagaacatacttgtggttgtggatgacaatatggagcctattatagctgattttggcactgcactatat 379  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||  |||    
T  36614600 tctaccaatagtgcaccgagatattaaaccaaagaacatacttgtggttgtggatgacaatatggagcctattacagctgattttggcactgcac--tat 36614697  T
Q  380 gcaagaagcagtttgaggattctgataaatttcataggttccata 424  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||    
T  36614698 gcaagaagaagtttgaggattctgattaatttcataggttccata 36614742  T

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Target: chr8 (Bit Score: 143; Significance: 6e-75; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 143; E-Value: 6e-75
Query Start/End: Original strand, 16 - 166
Target Start/End: Complemental strand, 2188988 - 2188838
Alignment:
Q  16 catcatcaatagttgaggttgagaactttgccaagggccgagtgtagagtaatcctagtagaaaatcaaatggcataacatgtgtgcaagaaatcaattc 115  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  2188988 catcatcaatagatgaggttgagaactttgccaagggccgagtgtagagtaatcctagtagaaaagcaaatggcataacatgtgtgcaagaaatcaattc 2188889  T
Q  116 agcaaaccaaatattcaacaacaaattgaaaggtcttgttaagttatctac 166  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2188888 agcaaaccaaatattcaacaacaaattgaaaggtcttgttaagttatctac 2188838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 156 - 220
Target Start/End: Complemental strand, 36361796 - 36361732
Alignment:
Q  156 aagttatctacgtaaattcttatggtatttttcaagatattataagcaacccttcagcttatggt 220  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36361796 aagttatctacgtaaattcttatggtatttttcaagatattataagcaacccttcagcttatggt 36361732  T

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Target: chr8; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 85 - 155
Target Start/End: Complemental strand, 36361898 - 36361828
Alignment:
Q  85 atggcataacatgtgtgcaagaaatcaattcagcaaaccaaatattcaacaacaaattgaaaggtcttgtt 155  Q
    ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36361898 atggcgtaacatgtgtggaagaaatcaattcagcaaaccaaatattcaacaacaaattgaaaggtcttgtt 36361828  T

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Target: chr8; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 218 - 286
Target Start/End: Complemental strand, 36361631 - 36361563
Alignment:
Q  218 ggttttagtgttacaaatgttggatgccgtggagtaggaaggaacaatggtcaaattacatgtctacca 286  Q
    ||||||||||||||||||| ||||||| ||||||||||||| |||||||||||| ||||||||||||||    
T  36361631 ggttttagtgttacaaatgctggatgctgtggagtaggaagaaacaatggtcaatttacatgtctacca 36361563  T

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Target: chr8; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 280 - 333
Target Start/End: Complemental strand, 2188842 - 2188789
Alignment:
Q  280 tctaccaatagtgcaccgagacattaaaccaaagaacatacttgtggttgtgga 333  Q
    |||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  2188842 tctaccaatagtgcactgagatattaaaccaaagaacatacttgtggttgtgga 2188789  T

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Target: chr3 (Bit Score: 98; Significance: 4e-48; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 159 - 288
Target Start/End: Complemental strand, 3067964 - 3067835
Alignment:
Q  159 ttatctacgtaaattcttatggtatttttcaagatattataagcaacccttcagcttatggttttagtgttacaaatgttggatgccgtggagtaggaag 258  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| | ||||||||||| ||||||||||||||||||||||||  |||||||||||||    
T  3067964 ttatctacgtgaattcttatggtatttttcaagatattataagcaatcattcagcttatgattttagtgttacaaatgttggatgttgtggagtaggaag 3067865  T
Q  259 gaacaatggtcaaattacatgtctaccaat 288  Q
    ||| ||||||||||||| ||||||||||||    
T  3067864 gaaaaatggtcaaattatatgtctaccaat 3067835  T

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Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 3068073 - 3068003
Alignment:
Q  81 tcaaatggcataacatgtgtgcaagaaatcaattcagcaaaccaaatattcaacaacaaattgaaaggtct 151  Q
    |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  3068073 tcaaatggcataacatgtgtgcaagaaatcaattcaacaaaccaaatattcaacaacaaattgaaaggtct 3068003  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 16 - 79
Target Start/End: Complemental strand, 40223991 - 40223928
Alignment:
Q  16 catcatcaatagttgaggttgagaactttgccaagggccgagtgtagagtaatcctagtagaaa 79  Q
    ||||||||||||  ||| |||||||||||||||||||||||||| |||||||||||||||||||    
T  40223991 catcatcaatagacgagcttgagaactttgccaagggccgagtgcagagtaatcctagtagaaa 40223928  T

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Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 207
Target Start/End: Original strand, 7615867 - 7615913
Alignment:
Q  161 atctacgtaaattcttatggtatttttcaagatattataagcaaccc 207  Q
    ||||| |||||| |||||||||||||||||||||| |||| ||||||    
T  7615867 atctatgtaaatacttatggtatttttcaagatatcataaacaaccc 7615913  T

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Target: chr5 (Bit Score: 50; Significance: 2e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 283 - 402
Target Start/End: Original strand, 37851058 - 37851169
Alignment:
Q  283 accaatagtgcaccgagacattaaaccaaagaacatacttgtggttgtggatgacaatatggagcctattatagctgattttggcactgcactatatgca 382  Q
    ||||||||||||||||||||| ||||||||||||||||      ||||  ||||||||||||| ||||||||| |||||||||||||||  || ||||||    
T  37851058 accaatagtgcaccgagacatcaaaccaaagaacatac------ttgttaatgacaatatggaacctattatatctgattttggcactg--ctctatgca 37851149  T
Q  383 agaagcagtttgaggattct 402  Q
    |||||| || ||| ||||||    
T  37851150 agaagctgtctgaagattct 37851169  T

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Target: chr5; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 286 - 377
Target Start/End: Original strand, 37832230 - 37832315
Alignment:
Q  286 aatagtgcaccgagacattaaaccaaagaacatacttgtggttgtggatgacaatatggagcctattatagctgattttggcactgcactat 377  Q
    |||||||||||||||||| |||||||||||||| || || |      | |||||||||||||||||||||||||||||||||||||| ||||    
T  37832230 aatagtgcaccgagacatcaaaccaaagaacattctcgttg------acgacaatatggagcctattatagctgattttggcactgccctat 37832315  T

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Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 283 - 377
Target Start/End: Original strand, 37837718 - 37837806
Alignment:
Q  283 accaatagtgcaccgagacattaaaccaaagaacatacttgtggttgtggatgacaatatggagcctattatagctgattttggcactgcactat 377  Q
    ||||||| ||||||||||||| ||||||||||||||||      |||| ||||||||| ||| |||| |||||||||||||| ||||||| ||||    
T  37837718 accaatactgcaccgagacatcaaaccaaagaacatac------ttgttgatgacaatttggtgcctgttatagctgattttagcactgccctat 37837806  T

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Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 364
Target Start/End: Original strand, 37845214 - 37845285
Alignment:
Q  287 atagtgcaccgagacattaaaccaaagaacatacttgtggttgtggatgacaatatggagcctattatagctgatttt 364  Q
    |||||||||| |||||| |||||||| ||||||||| | |      |||| |||||||||||||||||||||||||||    
T  37845214 atagtgcacctagacatcaaaccaaataacatacttcttg------atgataatatggagcctattatagctgatttt 37845285  T

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Target: chr7 (Bit Score: 47; Significance: 1e-17; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 283 - 372
Target Start/End: Original strand, 36866399 - 36866482
Alignment:
Q  283 accaatagtgcaccgagacattaaaccaaagaacatacttgtggttgtggatgacaatatggagcctattatagctgattttggcactgc 372  Q
    ||||||||||||||||||||| |||||||  ||||||||||| |      |||||||| |||||||||||||||||||||||||||||||    
T  36866399 accaatagtgcaccgagacatcaaaccaattaacatacttgttg------atgacaatttggagcctattatagctgattttggcactgc 36866482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0565 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0565
Description:

Target: scaffold0565; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 218 - 280
Target Start/End: Complemental strand, 3823 - 3761
Alignment:
Q  218 ggttttagtgttacaaatgttggatgccgtggagtaggaaggaacaatggtcaaattacatgt 280  Q
    |||||||| |||||||||| ||||||| |||| |||||||| |||||||||||||||||||||    
T  3823 ggttttagagttacaaatgctggatgctgtggtgtaggaagaaacaatggtcaaattacatgt 3761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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