View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_3 (Length: 988)
Name: NF0821_low_3
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 646; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 646; E-Value: 0
Query Start/End: Original strand, 89 - 813
Target Start/End: Complemental strand, 52890432 - 52889696
Alignment:
| Q |
89 |
tcatcataagatgcagtttttggctatccaagagacaaagatggaggtgattactccaactttatgttatagtttatggggtgatgaggattgcgattgg |
188 |
Q |
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| T |
52890432 |
tcatcataagatgcagtttttggctatccaagagacaaagatggaggtgattactccaaatttatgttatagtttatggggtgatgaggattgcgattgg |
52890333 |
T |
|
| Q |
189 |
gagtacctcccatcggagggtaatggtggggtaatattatttaatttaatatgaaaactttgaatgtgtcataacataaagatgatgtggttttatgaga |
288 |
Q |
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| T |
52890332 |
gagtacctcccatcggagggtaatggtggggtaatattatttaatttaatatgaaaactttgaatttgtcgtaacataaagatgatgtggttttatgaga |
52890233 |
T |
|
| Q |
289 |
atgaaatgatttcgtgagcttttaatcattaaaacgcaaatttacatgtttctacaggagagttaaagaatcttagtatccttgttattgatgcaaaggc |
388 |
Q |
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| T |
52890232 |
atgaaatgatttcgtgagc-tttaatcattaaaactcaaatttgcatgtttctacaggagagttaaagaatcttagtatccttgttattgatgcaaaggc |
52890134 |
T |
|
| Q |
389 |
aaatggtattggagtggtgcctacttcagtcaaaagaatgctggaaagaaacacattcctttttggcgctgtcgacttagctgaaagttctgtcacagaa |
488 |
Q |
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| T |
52890133 |
aaatggtattggagtggtgcctacttcagtcaaaagaatgctggaaagaaacacattcctttttggcgctgtcgacttagctgaaagttctgtcacagaa |
52890034 |
T |
|
| Q |
489 |
acagtaaagcaactccaacaattagaga-------------aggcatatgaaaaatacatgaccatattgaacctttgaacttatattcaatatccttct |
575 |
Q |
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| T |
52890033 |
acagtaaagcaactccaacaattagagaaggcatattcaagaggcatatgaaaagtacatgaccatattgaacctttgaacttatattcaatatccttct |
52889934 |
T |
|
| Q |
576 |
ttctttgtcgtattgtcatgttagtgttttaagccaacagcttatttgtttgaacgtgttccatttggatgacaggttgtttgatagcacggcaattgaa |
675 |
Q |
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| T |
52889933 |
ttctttgtcgtattgtcatgttagtgttttaagccaacagcttatttgtttgaacgtgttccatttggatgacaggttgtttgatagcacaccaattgaa |
52889834 |
T |
|
| Q |
676 |
aactatgtccgcatgaaccttgtaagtttccggttctttgtgacttgcaaaatgatttatttgttagtctttttcaactatggtattatacagtcagctt |
775 |
Q |
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| T |
52889833 |
aactatgtccgcatgaaccttgtaagtttccggttctttgtgacttgcaaaatgatttatttgttagtctttttcaactatggtattatacagccaactt |
52889734 |
T |
|
| Q |
776 |
gacattaggaggatggaacaaaaactgaagtccagtaa |
813 |
Q |
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| T |
52889733 |
gacattaggaggatggaacaaaaactgaagtccagtaa |
52889696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 330; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 330; E-Value: 0
Query Start/End: Original strand, 221 - 809
Target Start/End: Original strand, 47610494 - 47611094
Alignment:
| Q |
221 |
aatattatttaatttaatatgaaaactttgaatgtgtcataacataaagatgatgtggttttatgagaatgaaatgatttcgtgagcttttaatcattaa |
320 |
Q |
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| T |
47610494 |
aatattatttaatttaatatgaaaactttgagtgtgtcataacataaagatgatgtggttttatgagaatgagatgatttcatgag-ttttaataattaa |
47610592 |
T |
|
| Q |
321 |
aacgcaaatttacatgtttctacaggagagttaaagaatcttagtatccttgttattgatgcaaaggcaaatggtattggagtggtgcctacttcagtca |
420 |
Q |
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|| ||||||| ||||||||||||||||||||||| |||||||| || ||||||||||||||||||||||||| ||| ||||| |||||| ||| ||||| |
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| T |
47610593 |
gactcaaatttgcatgtttctacaggagagttaaaaaatcttagaattcttgttattgatgcaaaggcaaatgatatcggagttgtgcctgctttagtca |
47610692 |
T |
|
| Q |
421 |
aaagaatgctggaaagaaacacattcctttttggcgctgtcgacttagctgaaagttctgtcacagaaacagtaaagcaactccaacaattagagaag-- |
518 |
Q |
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| T |
47610693 |
aaagaatgctggaaagtaacacgttcctttttggtgctgttgacttagcggaatgttctgccacagaaacagtaaaccaactcgaacaattacagaaggc |
47610792 |
T |
|
| Q |
519 |
-------------gcatatgaaaaatacatgaccatattgaacctttgaacttatattcaatatccttctttctttgtcgtattgtcatgttagtgtttt |
605 |
Q |
| |
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||||||||||| || || |||||||||||| | ||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
47610793 |
ccgtattcaagctgcatatgaaaagtaaatcaccatattgaacttatgaacttatgctcaatatccttctttctttgtcgtgttgtcatgttagtgtttt |
47610892 |
T |
|
| Q |
606 |
aagccaacagcttatttgtttgaacgtgttccatttggatgacaggttgtttgatagcacggcaattgaaaactatgtccgcatgaaccttgtaagtttc |
705 |
Q |
| |
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| |||||| |||||||||||||| ||||||||| |||||||||||||||||||||||| | ||||||||||||||||||||||| |||||||||||||| |
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| T |
47610893 |
agcccaacaacttatttgtttgaatgtgttccatgtggatgacaggttgtttgatagcatgccaattgaaaactatgtccgcatggaccttgtaagtttc |
47610992 |
T |
|
| Q |
706 |
cggttctttgtgacttgcaaaatgatttatttgttagtctttttcaactatggtattatacagtcagcttgacattaggaggatggaacaaaaactgaag |
805 |
Q |
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|||||||||||||| |||||||||||||| |||| |||| |||||||||||||||||||||||||| | ||||||||| |||||||||||||| || | |
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| T |
47610993 |
cggttctttgtgac-cacaaaatgatttattcgttaatcttcttcaactatggtattatacagtcagc-taacattaggaagatggaacaaaaacagatg |
47611090 |
T |
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| Q |
806 |
tcca |
809 |
Q |
| |
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|||| |
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|
| T |
47611091 |
tcca |
47611094 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 45; E-Value: 4e-16
Query Start/End: Original strand, 220 - 264
Target Start/End: Original strand, 49544614 - 49544658
Alignment:
| Q |
220 |
taatattatttaatttaatatgaaaactttgaatgtgtcataaca |
264 |
Q |
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| T |
49544614 |
taatattatttaatttaatatgaaaactttgaatgtgtcataaca |
49544658 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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