View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_32 (Length: 406)
Name: NF0821_low_32
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_32 |
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Alignment Details
Target: chr5 (Bit Score: 251; Significance: 1e-139; HSPs: 10)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 115 - 391
Target Start/End: Original strand, 39476957 - 39477239
Alignment:
| Q |
115 |
aaggttggagggtattggtttaattttcaacactaatctatataatataacaaggattagccaatttcacttggctgaaagtcttgttcattttagctgt |
214 |
Q |
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| T |
39476957 |
aaggttggagggtattggtttaattttcaacactaatctatataatataacaaggattagccaatttcacttggctgaaagtcttgttcattttagctgt |
39477056 |
T |
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| Q |
215 |
tcctactagtgataacatttcattgt---gtcactcttgtaatatgtaaggccttaa---atgcccgattgaatttcatataagggtaattttaaagtga |
308 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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| T |
39477057 |
tcctactagtgataacatttcattgtgtcgtcactcttgtaatatgtaaggccttaaaccatgcccgattgaatttcatataagggtaattttaaagtga |
39477156 |
T |
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| Q |
309 |
accaactttgatctgtcactcaaaaacacatttaagtatattataaaaattgaaactatcattcttatagttatgatgagtat |
391 |
Q |
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| T |
39477157 |
accaactttgatctgtcactcaaaaacacatttaagtatattataaaaattgaaactatcatttttatagttatgatgagtat |
39477239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 34 - 383
Target Start/End: Original strand, 39484595 - 39484940
Alignment:
| Q |
34 |
ggtggatcttcttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatcctagtatataaggttggagggtattggt |
133 |
Q |
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| T |
39484595 |
ggtggatcttcctacacttatttaggtcatctgattgattatattatgaatcaggtatcaaattaaattattcgagtaaataaggtttgagggtattggt |
39484694 |
T |
|
| Q |
134 |
ttaattttcaacactaatctatataatataacaaggattagccaatttcacttggctgaaagtcttgttcattttagctgttcctactagtgataacatt |
233 |
Q |
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| T |
39484695 |
ttaattttcaacactaatc-----aatataataaggattagccaatttcacttggctgaaagtc-tgttcatttcagctgttcctactagtgataacgtt |
39484788 |
T |
|
| Q |
234 |
tcattgtgtcactcttgtaatatgtaaggccttaa---atgcccgattgaatttcatataagggtaattttaaagtgaaccaactttgatctgtcactca |
330 |
Q |
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|||| | | | || |||||| ||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
39484789 |
ccatttttttaatcctgtaatttgtaatgccttaagccatgcccgattgaatttcatataagggtaattttaaagtgaaccaacttt-atctgtcactca |
39484887 |
T |
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| Q |
331 |
aaaacacatttaagtatattataaaaattgaaactatcattcttatagttatg |
383 |
Q |
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| T |
39484888 |
acaacacatttaagtatattataaaaactgaaactatcatttttgtagttatg |
39484940 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 30 - 132
Target Start/End: Original strand, 39476838 - 39476940
Alignment:
| Q |
30 |
agaaggtggatcttcttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatcctagtatataaggttggagggtat |
129 |
Q |
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| T |
39476838 |
agaaggtggatcttcttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatcctagtatataaggttggagggtat |
39476937 |
T |
|
| Q |
130 |
tgg |
132 |
Q |
| |
|
||| |
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|
| T |
39476938 |
tgg |
39476940 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 34 - 105
Target Start/End: Original strand, 39487795 - 39487866
Alignment:
| Q |
34 |
ggtggatcttcttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatc |
105 |
Q |
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||||||||||| |||| ||||||||||| ||||||||||||||||||| || |||||| ||||||||||||| |
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| T |
39487795 |
ggtggatcttcctacacttatttaggtcatttgattgattatattatgaatcaggtatcaaattaaattatc |
39487866 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 30 - 111
Target Start/End: Original strand, 39452326 - 39452407
Alignment:
| Q |
30 |
agaaggtggatcttcttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatcctagta |
111 |
Q |
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|||||| |||||||| | || ||||||| ||||||| ||||||||||||||| | ||||||||||||||| |||||||||| |
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| T |
39452326 |
agaaggaggatcttcctccatttatttaagtcgtttaattgattatattatgaaccaggtatgaaattaaactatcctagta |
39452407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 37 - 98
Target Start/End: Complemental strand, 39463397 - 39463336
Alignment:
| Q |
37 |
ggatcttcttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaatta |
98 |
Q |
| |
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|||||||| |||| |||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
39463397 |
ggatcttcctacacttatttaggtcgtttgattgattatattattgatgaggtatgagatta |
39463336 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 112
Target Start/End: Original strand, 39455961 - 39456036
Alignment:
| Q |
37 |
ggatcttcttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattatcctagtat |
112 |
Q |
| |
|
|||||||||| || ||||||||||||||| ||||||||||||||| | |||||| |||||||||| ||| ||||| |
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| T |
39455961 |
ggatcttcttccacttatttaggtcgtttaattgattatattatgaaccaggtatcaaattaaattgtccaagtat |
39456036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 37 - 104
Target Start/End: Complemental strand, 39457135 - 39457068
Alignment:
| Q |
37 |
ggatcttcttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaattaaattat |
104 |
Q |
| |
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|||||||| |||| |||||||||||||||||| |||||||||| |||| |||||| ||| |||||||| |
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| T |
39457135 |
ggatcttcctacacttatttaggtcgtttgatcgattatattaggtatcaggtatcaaaataaattat |
39457068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 30 - 94
Target Start/End: Original strand, 39473356 - 39473420
Alignment:
| Q |
30 |
agaaggtggatcttcttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaa |
94 |
Q |
| |
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||||||||||||||||||| ||||||||||| ||| |||||||||||||| || ||||||||| |
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| T |
39473356 |
agaaggtggatcttcttacgcatatttaggtcgattggttgattatattatgaatcaggtatgaa |
39473420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 98
Target Start/End: Complemental strand, 43311373 - 43311309
Alignment:
| Q |
34 |
ggtggatcttcttacaattatttaggtcgtttgattgattatattatgtatgaggtatgaaatta |
98 |
Q |
| |
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||||||||||| |||| || |||||| |||||||||||||||||||| || | ||||||||||| |
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|
| T |
43311373 |
ggtggatcttcctacacttgcttaggtagtttgattgattatattatgaatcatgtatgaaatta |
43311309 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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