View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0821_low_33 (Length: 404)
Name: NF0821_low_33
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_33 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 271; Significance: 1e-151; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 30 - 393
Target Start/End: Original strand, 12527352 - 12527713
Alignment:
| Q |
30 |
caaaataccataagagaagtaaaataagaaggtccaacatt-aaacatgaggaagcaaatcaaataacaaaaatttatcctcaagaatcagaatcacttt |
128 |
Q |
| |
|
||||||| ||||||||||||||||||||||| ||||| ||| |||||||| ||||||||||||||||||| |||||| | |||||||||||||||||| |
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|
| T |
12527352 |
caaaatatcataagagaagtaaaataagaagctccaagatttaaacatgacgaagcaaatcaaataacaa---tttatcattaagaatcagaatcacttt |
12527448 |
T |
|
| Q |
129 |
cctcatcagagtaacctttgttgatcttattcaaagcagatccaaagatgctctcaaattccttcaaaaagtccacaaacacaaaagtatcttcctgcct |
228 |
Q |
| |
|
| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||| |||||||||||| | |
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|
| T |
12527449 |
cttcaccggagtaacctttgttgatcttattcaaagcagatccaaagatgctctcaagctccttcaaaaagtccaaaaacacaaatgtatcttcctgctt |
12527548 |
T |
|
| Q |
229 |
gttgccatcaatcaagctttttccctttattattgcagaatctatcaaaattttgtctacaggtgtcagcatggaactaacactattatccttcattatt |
328 |
Q |
| |
|
||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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|
| T |
12527549 |
gtttccatcaatcaagctttttccctttatcattgcagaatctatcaaaattttgtctacaggtgtcagcatggaactaacacaattatccttcatgatt |
12527648 |
T |
|
| Q |
329 |
ttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctttttgaacttcat |
393 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
12527649 |
ttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctttttgaacttcat |
12527713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 113; Significance: 4e-57; HSPs: 11)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 62 - 393
Target Start/End: Original strand, 8544513 - 8544842
Alignment:
| Q |
62 |
tccaacattaaacatgaggaagcaaatcaaataacaaaaatttatcctcaagaatcagaatcactttcctcatcagagtaacctttgttgatcttattca |
161 |
Q |
| |
|
|||||||||| ||| ||||| ||||||||||| |||||| | | || ||||||| ||||||||||| ||||||| ||||||| ||||||||| |||| |
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|
| T |
8544513 |
tccaacattatacacaaggaaacaaatcaaatagcaaaaaataa--ctaaagaatccaaatcactttccccatcagattaaccttggttgatcttgttca |
8544610 |
T |
|
| Q |
162 |
aagcagatccaaagatgctctcaaattccttcaaaaagtccacaaacacaaaagtatcttcctgcctgttgccatcaatcaagctttttccctttattat |
261 |
Q |
| |
|
| |||| ||||||||||||||| |||||||||||||||||||||||||| | ||||||||| |||| ||||||||| |||||||||||||| || |
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|
| T |
8544611 |
tggaagattcaaagatgctctcaagctccttcaaaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatcaaactttttccctttatcat |
8544710 |
T |
|
| Q |
262 |
tgcagaatctatcaaaattttgtctacaggtgtcagcatggaactaacactattatccttcattattttcctcacatggtaaagatagtcatccaaagca |
361 |
Q |
| |
|
|||||||| || |||||||||||||| | ||| ||||| |||||| || ||||||||||| ||||||||||| ||||||||| | ||||||||| |
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|
| T |
8544711 |
tgcagaattgatattcattttgtctacaggggcgagcttggaattaacacaatcatccttcattactttcctcacattgtaaagataatactccaaagca |
8544810 |
T |
|
| Q |
362 |
ttgattgctttaactttctttttgaacttcat |
393 |
Q |
| |
|
|| |||||| |||||| ||| |||||||||| |
|
|
| T |
8544811 |
tttcttgcttcaactttttttctgaacttcat |
8544842 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 86 - 393
Target Start/End: Original strand, 8569213 - 8569520
Alignment:
| Q |
86 |
aatcaaataacaaaaatttatcctcaagaatcagaatcactttcctcatcagagtaacctttgttgatcttattcaaagcagatccaaagatgctctcaa |
185 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||||||||| ||||||||||| ||||||||||||||| |||| ||||||| ||||||||||||||| |
|
|
| T |
8569213 |
aatcaaataacaaaaaattattgctaagaatccgaatcacttttctcatcagagtcacctttgttgatcttgttcatagcagattcaaagatgctctcaa |
8569312 |
T |
|
| Q |
186 |
attccttcaaaaagtccacaaacacaaaagtatcttcctgcctgttgccatcaatcaagctttttccctttattattgcagaatctatcaaaattttgtc |
285 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||| ||| | | || ||||||| ||||||||||| | ||||| || | ||| |||||| |
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|
| T |
8569313 |
gctccttcagaaagtccacaaacacaaaggtatcttcttgctggctatcaccaatcaaactttttcccttggtcattgctgagttgatcttctctttgtc |
8569412 |
T |
|
| Q |
286 |
tacaggtgtcagcatggaactaacactattatccttcattattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctttttg |
385 |
Q |
| |
|
|||||| || ||| | || ||| ||||| | |||||||| ||| || || | ||||||||| |||||||||||||| |||||| ||||||||||||| |
|
|
| T |
8569413 |
tacaggagtgagctttgagctagtactatcgttcttcattacttttcttactttgtaaagataatcatccaaagcatttcttgcttcaactttctttttg |
8569512 |
T |
|
| Q |
386 |
aacttcat |
393 |
Q |
| |
|
|||||||| |
|
|
| T |
8569513 |
aacttcat |
8569520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 91; E-Value: 6e-44
Query Start/End: Original strand, 143 - 389
Target Start/End: Original strand, 8580656 - 8580902
Alignment:
| Q |
143 |
cctttgttgatcttattcaaagcagatccaaagatgctctcaaattccttcaaaaagtccacaaacacaaaagtatcttcctgcctgttgccatcaatca |
242 |
Q |
| |
|
||||| |||||||| |||| | |||| ||||||||||||||| ||||||| |||||||||||||||||| | ||||||||| |||| |||||||| |
|
|
| T |
8580656 |
cctttcttgatcttgttcatggaagattcaaagatgctctcaagctccttcagaaagtccacaaacacaaatgcatcttcctgttggttgttatcaatca |
8580755 |
T |
|
| Q |
243 |
agctttttccctttattattgcagaatctatcaaaattttgtctacaggtgtcagcatggaactaacactattatccttcattattttcctcacatggta |
342 |
Q |
| |
|
| |||||||||||||| |||||||||| ||| ||||||||||| || ||| | |||||||||| |||||||| ||||| ||||||||| | ||| |
|
|
| T |
8580756 |
aactttttccctttatcattgcagaattaatcttttctttgtctacagtggtgagctttgaactaacacaattatcctccattactttcctcactttgta |
8580855 |
T |
|
| Q |
343 |
aagatagtcatccaaagcattgattgctttaactttctttttgaact |
389 |
Q |
| |
|
|||||| || ||||||||||| ||||||||||||||||| ||||||| |
|
|
| T |
8580856 |
aagataatcgtccaaagcatttattgctttaactttcttcttgaact |
8580902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 111 - 381
Target Start/End: Complemental strand, 8384120 - 8383850
Alignment:
| Q |
111 |
aagaatcagaatcactttcctcatcagagtaacctttgttgatcttattcaaagcagatccaaagatgctctcaaattccttcaaaaagtccacaaacac |
210 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| | | |||||| || ||| ||||| ||||||||||||||| ||| ||| |||||||||||| || |
|
|
| T |
8384120 |
aagaatcagaatcactttcctcatcagagcaaccaatttggatcttgtttaaaacagattcaaagatgctctcaagctccatcagaaagtccacaaatac |
8384021 |
T |
|
| Q |
211 |
aaaagtatcttcctgcctgttgccatcaatcaagctttttccctttattattgcagaatctatcaaaattttgtctacaggtgtcagcatggaactaaca |
310 |
Q |
| |
|
||| || |||| ||| |||| ||||||||||| ||||| ||||| || || ||||||| ||| |||||||||| || | ||||| ||| ||||| |
|
|
| T |
8384020 |
aaatgtttctttgtgcttgttaccatcaatcaaccttttccccttcatcatagcagaattgatctttattttgtctattgggttgagcattgaagtaaca |
8383921 |
T |
|
| Q |
311 |
ctattatccttcattattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctt |
381 |
Q |
| |
|
|||| ||| ||||||| |||||||| | ||||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
8383920 |
ctatcatctttcattactttcctcatgttgtaaagataatcgtccaaagcattcattgctttaactttctt |
8383850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 114 - 392
Target Start/End: Original strand, 8608847 - 8609125
Alignment:
| Q |
114 |
aatcagaatcactttcctcatcagagtaacctttgttgatcttattcaaagcagatccaaagatgctctcaaattccttcaaaaagtccacaaacacaaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || ||||| |||||||||||| |||| || |||||| ||||||| |||||||||||||||||| |
|
|
| T |
8608847 |
aatcagaatcactttcctcatcagagtaacctttattaatcttgttcaaagcagattcaaatatcttctcaagctccttcagaaagtccacaaacacaaa |
8608946 |
T |
|
| Q |
214 |
agtatcttcctgcctgttgccatcaatcaagctttttccctttattattgcagaatctatcaaaattttgtctacaggtgtcagcatggaactaacacta |
313 |
Q |
| |
|
|| || | ||| ||| |||||||||| | ||||| ||||| ||||||| || | | |||||||| || || ||||||||| ||||||| |
|
|
| T |
8608947 |
tgtttcatgttgctctttgtcatcaatcaaattctttccttttatcattgcagcattgagcttcattttgtcagtagaggtaagcatggaagtaacactc |
8609046 |
T |
|
| Q |
314 |
ttatccttcattattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctttttgaacttca |
392 |
Q |
| |
|
||||||||||| ||||| || | |||||| || ||||||||| |||| |||||||||||||||||||| ||||||| |
|
|
| T |
8609047 |
ccatccttcattactttccgcatgttgtaaaggtaatcatccaaaacattcattgctttaactttctttttaaacttca |
8609125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 120 - 389
Target Start/End: Original strand, 8575235 - 8575504
Alignment:
| Q |
120 |
aatcactttcctcatcagagtaacctttgttgatcttattcaaagcagatccaaagatgctctcaaattccttcaaaaagtccacaaacacaaaagtatc |
219 |
Q |
| |
|
|||||||||||||||||||||| |||||||| ||||| ||| || |||| ||||||||||||||| ||||| | ||||| ||||| ||| | |||| |
|
|
| T |
8575235 |
aatcactttcctcatcagagtagcctttgttaatcttgttcttagaagattcaaagatgctctcaagctcctttagcaagtctacaaaaacagacatatc |
8575334 |
T |
|
| Q |
220 |
ttcctgcctgttgccatcaatcaagctttttccctttattattgcagaatctatcaaaattttgtctacaggtgtcagcatggaactaacactattatcc |
319 |
Q |
| |
|
||||||| ||| ||||| ||||| |||| ||||||||| ||||| |||| ||| |||||| ||||| || ||| | |||| ||||| || |||| |
|
|
| T |
8575335 |
ttcctgctggttaccatcgatcaaactttctccctttatcattgctgaattaatcttctctttgtcgacaggggtgagctttgaaccaacaccatcatcc |
8575434 |
T |
|
| Q |
320 |
ttcattattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctttttgaact |
389 |
Q |
| |
|
||||||| ||||||| ||| || |||||| || ||||| ||||| |||||| |||||||||| ||||||| |
|
|
| T |
8575435 |
ttcattaatttcctcgcattgtgaagataatcgtccaatgcatttattgctgtaactttcttcttgaact |
8575504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 296 - 393
Target Start/End: Original strand, 8601083 - 8601180
Alignment:
| Q |
296 |
agcatggaactaacactattatccttcattattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctttttgaacttcat |
393 |
Q |
| |
|
||||||||||||||||||| ||||||||||| ||| |||| | ||||||||| ||||||| | |||| ||||||||||||||||| ||||||||||| |
|
|
| T |
8601083 |
agcatggaactaacactatcatccttcattacttttctcatagtgtaaagataatcatccagatcattcattgctttaactttcttcttgaacttcat |
8601180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 392
Target Start/End: Complemental strand, 29582961 - 29582804
Alignment:
| Q |
235 |
atcaatcaagctttttccctttattattgcagaatctatcaaaattttgtctacaggtgtcagcatggaactaacactattatccttcattattttcctc |
334 |
Q |
| |
|
||||||||| |||||||| || || |||||||||| ||| |||||||| |||| |||| |||||||||||| | ||||||| ||||| ||| ||| |
|
|
| T |
29582961 |
atcaatcaaactttttccgttcataattgcagaattgatctttgttttgtctgcaggagtcaccatggaactaacgttgttatcctccattactttactc |
29582862 |
T |
|
| Q |
335 |
acatggtaaagatagtcatccaaagcattgattgctttaactttctttttgaacttca |
392 |
Q |
| |
|
| | |||||||||||| ||||||||||| |||||| || || || ||| |||||||| |
|
|
| T |
29582861 |
attttgtaaagatagtcgtccaaagcattcattgctctagctctcatttggaacttca |
29582804 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 235 - 363
Target Start/End: Complemental strand, 29578792 - 29578664
Alignment:
| Q |
235 |
atcaatcaagctttttccctttattattgcagaatctatcaaaattttgtctacaggtgtcagcatggaactaacactattatccttcattattttcctc |
334 |
Q |
| |
|
||||||||| || ||||| || || || |||||||| ||| ||||||||| |||| | |||||||||||||||||| ||||||| ||||| ||| ||| |
|
|
| T |
29578792 |
atcaatcaaactctttccattcataatcgcagaatcgatcttcattttgtctgcaggagccagcatggaactaacactgttatcctccattactttactc |
29578693 |
T |
|
| Q |
335 |
acatggtaaagatagtcatccaaagcatt |
363 |
Q |
| |
|
| ||||||||| || ||||||||||| |
|
|
| T |
29578692 |
gttttgtaaagataatcttccaaagcatt |
29578664 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 316 - 381
Target Start/End: Original strand, 8589770 - 8589835
Alignment:
| Q |
316 |
atccttcattattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctt |
381 |
Q |
| |
|
||||||||||| |||||||| | ||||||||| ||||| |||||||| |||||| |||||||||| |
|
|
| T |
8589770 |
atccttcattactttcctcatgtcgtaaagataatcatctaaagcattcattgctctaactttctt |
8589835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 302 - 390
Target Start/End: Original strand, 8537154 - 8537242
Alignment:
| Q |
302 |
gaactaacactattatccttcattattttcctcacatggtaaagatagtcatccaaagcattgattgctttaactttctttttgaactt |
390 |
Q |
| |
|
||||||||| | |||||||||| | |||| |||||| ||| |||||||||||||||||||| ||||| | | |||||| |||||||| |
|
|
| T |
8537154 |
gaactaacattcgtatccttcataactttcttcacattgtagagatagtcatccaaagcatttattgcctcagatttcttcttgaactt |
8537242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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