View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_34 (Length: 398)
Name: NF0821_low_34
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_34 |
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Alignment Details
Target: chr3 (Bit Score: 80; Significance: 2e-37; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 47458223 - 47458144
Alignment:
| Q |
1 |
accaggttttacctttaccgttttcccgaatcacaaaatcttttgttttttcgtaacaacatgtaaaaatcaaattcatc |
80 |
Q |
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| T |
47458223 |
accaggttttacctttaccgttttcccgaatcacaaaatcttttgttttttcgtaacaacatgtaaaaatcaaattcatc |
47458144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 153 - 261
Target Start/End: Complemental strand, 47458031 - 47457915
Alignment:
| Q |
153 |
tgtttatttggatcgatcgaacaaaatgga----------ttttgattgaatataatagagtcaaacgaaataaaaatatccaattaagtgtttgataat |
242 |
Q |
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| T |
47458031 |
tgtttatttggatcgatcgaacaaaatggagcgaaattgattttgattgaatataatag--tcaaacgaaataaaaatatccaattaagtgtttgataat |
47457934 |
T |
|
| Q |
243 |
tgtttaagtttgattagag |
261 |
Q |
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||||||||||||||||||| |
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| T |
47457933 |
tgtttaagtttgattagag |
47457915 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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