View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0821_low_36 (Length: 387)

Name: NF0821_low_36
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0821_low_36
NF0821_low_36
[»] chr6 (13 HSPs)
chr6 (131-316)||(5433658-5433836)
chr6 (232-316)||(5176455-5176540)
chr6 (232-316)||(5278282-5278367)
chr6 (254-289)||(5257642-5257677)
chr6 (254-289)||(5284697-5284732)
chr6 (256-319)||(5182204-5182268)
chr6 (254-289)||(5147204-5147239)
chr6 (254-289)||(5396688-5396723)
chr6 (255-289)||(5128725-5128759)
chr6 (211-316)||(5690439-5690544)
chr6 (256-289)||(5067002-5067035)
chr6 (240-289)||(5354922-5354971)
chr6 (256-289)||(5446897-5446930)
[»] chr3 (1 HSPs)
chr3 (324-382)||(51805610-51805668)
[»] chr4 (1 HSPs)
chr4 (324-382)||(20017396-20017454)
[»] chr5 (1 HSPs)
chr5 (254-289)||(8877347-8877382)
[»] chr7 (1 HSPs)
chr7 (256-319)||(36214106-36214170)


Alignment Details
Target: chr6 (Bit Score: 90; Significance: 2e-43; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 131 - 316
Target Start/End: Original strand, 5433658 - 5433836
Alignment:
Q  131 tagaaataaatagagacaaatctaatgtaaatatattactttcaacgtttaaggttagtgatacatagtagttgcattcgtttattatttaaagcttctt 230  Q
    |||||||||||| | ||||||||||||||||| | |||||||        ||||||||||||||||||||||||| |||||||||||||||| |||| ||    
T  5433658 tagaaataaataaatacaaatctaatgtaaatgtcttacttt--------aaggttagtgatacatagtagttgctttcgtttattatttaatgcttatt 5433749  T
Q  231 ccctatgtcttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaac-tagtcactgtcattttctgaca 316  Q
    ||||||||||||||||| || | | ||||||||||||| ||||||||||||||||||||||| | |||||| ||||||| |||||||    
T  5433750 ccctatgtcttctcttttatttttgtgttcttgcagagaatggagaagctgaaaattcttaaccttagtcattgtcattatctgaca 5433836  T

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Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 5176455 - 5176540
Alignment:
Q  232 cctatgtcttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaac-tagtcactgtcattttctgaca 316  Q
    |||| ||||||| |||||| | | ||||||||||||||||||||||||||||||||||||| | |||||| | ||||| |||||||    
T  5176455 cctaagtcttctatttaatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgaca 5176540  T

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Target: chr6; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 232 - 316
Target Start/End: Original strand, 5278282 - 5278367
Alignment:
Q  232 cctatgtcttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaac-tagtcactgtcattttctgaca 316  Q
    |||| ||||||| |||||| | | ||||||||||||||||||||||||||||||||||||| | |||||| | ||||| |||||||    
T  5278282 cctaagtcttctatttaatatttttgttcttgcagaggatggagaagctgaaaattcttaatcttagtcattctcattatctgaca 5278367  T

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Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 289
Target Start/End: Complemental strand, 5257677 - 5257642
Alignment:
Q  254 tatgttcttgcagaggatggagaagctgaaaattct 289  Q
    ||||||||||||||||||||||||||||||||||||    
T  5257677 tatgttcttgcagaggatggagaagctgaaaattct 5257642  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 289
Target Start/End: Complemental strand, 5284732 - 5284697
Alignment:
Q  254 tatgttcttgcagaggatggagaagctgaaaattct 289  Q
    ||||||||||||||||||||||||||||||||||||    
T  5284732 tatgttcttgcagaggatggagaagctgaaaattct 5284697  T

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Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 5182268 - 5182204
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattcttaaac-tagtcactgtcattttctgacaaag 319  Q
    |||||||||||||| ||||||||||||||||||| || | |||||| | |||||||||| |||||    
T  5182268 tgttcttgcagaggctggagaagctgaaaattctcaatcttagtcattctcattttctgtcaaag 5182204  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 289
Target Start/End: Complemental strand, 5147239 - 5147204
Alignment:
Q  254 tatgttcttgcagaggatggagaagctgaaaattct 289  Q
    ||||||||||||||||||||||||||| ||||||||    
T  5147239 tatgttcttgcagaggatggagaagctaaaaattct 5147204  T

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Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 5396688 - 5396723
Alignment:
Q  254 tatgttcttgcagaggatggagaagctgaaaattct 289  Q
    |||||||||||||||| |||||||||||||||||||    
T  5396688 tatgttcttgcagaggctggagaagctgaaaattct 5396723  T

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Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 255 - 289
Target Start/End: Complemental strand, 5128759 - 5128725
Alignment:
Q  255 atgttcttgcagaggatggagaagctgaaaattct 289  Q
    ||||||||||||| |||||||||||||||||||||    
T  5128759 atgttcttgcagatgatggagaagctgaaaattct 5128725  T

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Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 316
Target Start/End: Complemental strand, 5690544 - 5690439
Alignment:
Q  211 tttattatttaaagcttcttccctatgtcttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattcttaaac-tagtcactgtcattt 309  Q
    |||||| ||| ||||||||| | || || ||||||||||| | ||| |||||| ||| |||||||||||| |||||||| || | |||||||| |||||     
T  5690544 tttattttttgaagcttcttacataagt-ttctctttaatatttatattcttgtagatgatggagaagcttaaaattctcaatcttagtcactctcatta 5690446  T
Q  310 tctgaca 316  Q
    |||||||    
T  5690445 tctgaca 5690439  T

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Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Complemental strand, 5067035 - 5067002
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattct 289  Q
    ||||||||||||||||||| ||||||||||||||    
T  5067035 tgttcttgcagaggatggaaaagctgaaaattct 5067002  T

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Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 5354971 - 5354922
Alignment:
Q  240 ttctctttaatgtatatgttcttgcagaggatggagaagctgaaaattct 289  Q
    ||||||||||| | ||||||||||||||| |||||| | |||||||||||    
T  5354971 ttctctttaatatgtatgttcttgcagagaatggagcatctgaaaattct 5354922  T

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Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 256 - 289
Target Start/End: Original strand, 5446897 - 5446930
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattct 289  Q
    ||||||||||||||||||||||||| ||||||||    
T  5446897 tgttcttgcagaggatggagaagctaaaaattct 5446930  T

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Target: chr3 (Bit Score: 59; Significance: 7e-25; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 324 - 382
Target Start/End: Original strand, 51805610 - 51805668
Alignment:
Q  324 agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt 382  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  51805610 agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt 51805668  T

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Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 324 - 382
Target Start/End: Complemental strand, 20017454 - 20017396
Alignment:
Q  324 agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt 382  Q
    ||||||||||||||||||||||||||||| |||   |||||||||| || |||||||||    
T  20017454 agctgttgcaagtttttcaacaatccaagctctgaaggaatttgacttgcgaggaaatt 20017396  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 254 - 289
Target Start/End: Original strand, 8877347 - 8877382
Alignment:
Q  254 tatgttcttgcagaggatggagaagctgaaaattct 289  Q
    ||||||||||||||||||||||||||| ||||||||    
T  8877347 tatgttcttgcagaggatggagaagctaaaaattct 8877382  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 256 - 319
Target Start/End: Complemental strand, 36214170 - 36214106
Alignment:
Q  256 tgttcttgcagaggatggagaagctgaaaattcttaaac-tagtcactgtcattttctgacaaag 319  Q
    |||||||||||||| |||| |||||||||||||| || | |||||| | ||||| ||||||||||    
T  36214170 tgttcttgcagaggctggaaaagctgaaaattctcaatcttagtcattctcattatctgacaaag 36214106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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