View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_40 (Length: 368)
Name: NF0821_low_40
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_40 |
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Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 83 - 313
Target Start/End: Complemental strand, 30078918 - 30078688
Alignment:
| Q |
83 |
tttgtcgcataccaacccgtatccgagaaaaccccttcaacattctcaagtggcggcccaagaccagcattggtagtaaacttacacatattagtccaaa |
182 |
Q |
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| T |
30078918 |
tttgtcgcataccaacccgtatcggagaaaaccccttcaacattctcaagtggcggcccaagaccagcattggtagtaaacttacacatattagtccaaa |
30078819 |
T |
|
| Q |
183 |
gactcaaactcttacactccttcaacatatcctcattaaaccttgaaggaagatcatgcacgtaaatatacctccccccacaaggatcactcttattttc |
282 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
30078818 |
gactcaaactcttacactccttcaacatatcctcattaaaccttgaaggaagatcatgcacataaatatacctccccccacaaggatcactcttattttc |
30078719 |
T |
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| Q |
283 |
accggttttcaatgctttcataaaaggaaaa |
313 |
Q |
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|||||||||||| |||||||||||||||||| |
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| T |
30078718 |
accggttttcaacgctttcataaaaggaaaa |
30078688 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 30 - 77
Target Start/End: Complemental strand, 51805657 - 51805610
Alignment:
| Q |
30 |
aggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagct |
77 |
Q |
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| T |
51805657 |
aggtcaaattccaaaagaacttggattgttgaaaaacttgcaacagct |
51805610 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 89 - 186
Target Start/End: Original strand, 39486235 - 39486332
Alignment:
| Q |
89 |
gcataccaacccgtatccgagaaaaccccttcaacattctcaagtggcggcccaagaccagcattggtagtaaacttacacatattagtccaaagact |
186 |
Q |
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| T |
39486235 |
gcataccaaccagtatcagagaaaactccgtcgatgttttcgagtggcggaccaagacctgcattggtagtaaacttacacatgttcgtccaaagact |
39486332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 77
Target Start/End: Original strand, 20017409 - 20017454
Alignment:
| Q |
32 |
gtcaaattccaaaagaacttggattgttgaaaaacttgcaacagct |
77 |
Q |
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|||||||||| ||| ||||||||||||||||||||||||||||| |
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| T |
20017409 |
gtcaaattccttcagagcttggattgttgaaaaacttgcaacagct |
20017454 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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