View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_43 (Length: 366)
Name: NF0821_low_43
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_43 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 29 - 354
Target Start/End: Original strand, 36276990 - 36277315
Alignment:
| Q |
29 |
acaacttggttacaaactaggacaaaaaccaaactataagagcacgattatgaaagcaagactgcaactttgaagaaagtgtccccctccaaaaaacacc |
128 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36276990 |
acaacttggttacaaactaggacaaaaaccaaactataagagcacaattatgaaagcaagactgcaactttgaagaaagtgtccccctccaaaaaacacc |
36277089 |
T |
|
| Q |
129 |
cttaatagctaaacttattttgtgcaactttagctataaatagcattagcacgtacaatcacttttagtttatggttttaatcaatttcaacgtcttctg |
228 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36277090 |
ctaaatagctaaacttattttgtgcaactttagctataaatagcattagcacgtacaatcacttttagtttatggttttaatcaatttcaacgtcttctg |
36277189 |
T |
|
| Q |
229 |
gcagctgtttctctttgtgcattgnnnnnnncagcagccacaggaggcccgaggtcattgtcttgtgcaaatttccttgtgttaaagagatctcttgatg |
328 |
Q |
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|
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
36277190 |
gcagctgtttctctttgtgcattgaaaaaaacagcagccacaggaggcccgaggtcattgtcttgtgcaaatttctttgtgttaaagagatctcttgatg |
36277289 |
T |
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| Q |
329 |
ttggtattttcatcactgtctgtctg |
354 |
Q |
| |
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|||||||||||||||||||||||||| |
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| T |
36277290 |
ttggtattttcatcactgtctgtctg |
36277315 |
T |
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