View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_46 (Length: 355)
Name: NF0821_low_46
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_46 |
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Alignment Details
Target: chr5 (Bit Score: 279; Significance: 1e-156; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 58 - 348
Target Start/End: Complemental strand, 28764286 - 28763996
Alignment:
| Q |
58 |
tgatgatgtctggagaaatcttccatgtgttccggacactgcgggcatagtttgctgggacaacaatgtcaataaaggtgagtatttaagtggcactatt |
157 |
Q |
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| T |
28764286 |
tgataatgtctggagaaatcttccatgtgttccggacaatgcgggcatagtttgctgggacaacaatgtcaataaaggtgagtatttaagtggcactatt |
28764187 |
T |
|
| Q |
158 |
aactggttggctattcaaaattggttacaatgtgataaatattgtgaaaatatttctattatgcgatttgtgattatttcgcttgatcttggtgtggaga |
257 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28764186 |
aactggttggctattcaaaattggttacaatgtgataaatattgtgaaaatatttctattatgcgatttgtgattatttcgcttgatcttggtatggaga |
28764087 |
T |
|
| Q |
258 |
cttataaaaagatgatgccccctccggattgtgatcaagtcccatttgtcattgagccaattattgcagtgttgatggactgcctttgttt |
348 |
Q |
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| T |
28764086 |
cttataaaaagatgatgccccctccggattgtgatcaagtcccatttgtcattgagccaattattgcagtgttgatggactgcctttgttt |
28763996 |
T |
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Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 127 - 179
Target Start/End: Complemental strand, 11339734 - 11339682
Alignment:
| Q |
127 |
caataaaggtgagtatttaagtggcactattaactggttggctattcaaaatt |
179 |
Q |
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| T |
11339734 |
caataatggtgcatatttaagtggcactatttactggttggctattcagaatt |
11339682 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 132 - 174
Target Start/End: Original strand, 29106577 - 29106619
Alignment:
| Q |
132 |
aaggtgagtatttaagtggcactattaactggttggctattca |
174 |
Q |
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| T |
29106577 |
aaggtgtgtatttgagtggcactcttaactggttggctattca |
29106619 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 19779385 - 19779417
Alignment:
| Q |
146 |
agtggcactattaactggttggctattcaaaat |
178 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
19779385 |
agtggcactattaactggttgactattcaaaat |
19779417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Complemental strand, 19887998 - 19887966
Alignment:
| Q |
146 |
agtggcactattaactggttggctattcaaaat |
178 |
Q |
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||||||||||||||||||||| ||||||||||| |
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| T |
19887998 |
agtggcactattaactggttgactattcaaaat |
19887966 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 146 - 178
Target Start/End: Original strand, 14749180 - 14749212
Alignment:
| Q |
146 |
agtggcactattaactggttggctattcaaaat |
178 |
Q |
| |
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||||||| ||||||||||||||||||||||||| |
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| T |
14749180 |
agtggcagtattaactggttggctattcaaaat |
14749212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 12735098 - 12735054
Alignment:
| Q |
134 |
ggtgagtatttaagtggcactattaactggttggctattcaaaat |
178 |
Q |
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| T |
12735098 |
ggtgcgtatgtaagtggcactgttaactggttggctattcgaaat |
12735054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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