View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0821_low_48 (Length: 334)
Name: NF0821_low_48
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_48 |
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| [»] scaffold0688 (1 HSPs) |
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| [»] scaffold0086 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 238; Significance: 1e-132; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 58 - 323
Target Start/End: Original strand, 16648491 - 16648761
Alignment:
| Q |
58 |
aacacaattaagtcgtggatttagcatatccacatcatggattctcaaataatcacatacctaaaatcacaacaacatacttacaaattcaacatcaat- |
156 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16648491 |
aacacaattaagtcgtggatttagcatatccacatcatggattctcaaataatcacatacctaaaatcacaacaacatacttacaaattcaacatcaatt |
16648590 |
T |
|
| Q |
157 |
---aacatgaagaattacacaactcttttaccatccatttgttcacatgtgaatagag-actcccacttacctcaacaatcaacaaataaaatctctcca |
252 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
16648591 |
aataacatgaagaattacacaactcttttaccatccatttgttcacatgtgaatagaggactcccacttacctcaacaatcaacaaataaaatctctcga |
16648690 |
T |
|
| Q |
253 |
atgaatgggtctctctccaatctcctcctctagccttctagagttcttcttcaccactttagatccccttt |
323 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
16648691 |
atgaatgggcctctctccaatctcctcctctagccttctagagttcttcttcaccactttagatccccttt |
16648761 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 200 - 300
Target Start/End: Original strand, 20772163 - 20772264
Alignment:
| Q |
200 |
atgtgaatagagactc-ccacttacctcaacaatcaacaaataaaatctctccaatgaatgggtctctctccaatctcctcctctagccttctagagttc |
298 |
Q |
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||||||||||| |||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| | |||||||| ||||||||| |
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| T |
20772163 |
atgtgaatagaaactctccccttacctcaacaatcaacaaagcaaatctctccaatgaatgggtctctctccaatcttatattctagcctcctagagttc |
20772262 |
T |
|
| Q |
299 |
tt |
300 |
Q |
| |
|
|| |
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|
| T |
20772263 |
tt |
20772264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 58 - 128
Target Start/End: Original strand, 20771990 - 20772060
Alignment:
| Q |
58 |
aacacaattaagtcgtggatttagcatatccacatcatggattctcaaataatcacatacctaaaatcaca |
128 |
Q |
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||||||||||| || ||||||||| ||||| ||||||||||||| |||||||||||| ||| ||||||||| |
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| T |
20771990 |
aacacaattaaatcatggatttagtatatcaacatcatggattcacaaataatcacaaacccaaaatcaca |
20772060 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 3e-20; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 29 - 138
Target Start/End: Complemental strand, 9385154 - 9385034
Alignment:
| Q |
29 |
atttcactcattttaacataaaactcaaaa-----------acacaattaagtcgtggatttagcatatccacatcatggattctcaaataatcacatac |
117 |
Q |
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|||||||||||||||||||||||||||||| ||||||| || || ||||||||||||||| ||||||||||||| ||||||||||||||| |
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| T |
9385154 |
atttcactcattttaacataaaactcaaaaccacaacattaacacaataaaatcatggatttagcatatcaacatcatggattcacaaataatcacatac |
9385055 |
T |
|
| Q |
118 |
ctaaaatcacaacaacatact |
138 |
Q |
| |
|
| ||||||||||||||||| |
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| T |
9385054 |
tcataatcacaacaacatact |
9385034 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 200 - 302
Target Start/End: Original strand, 3379062 - 3379165
Alignment:
| Q |
200 |
atgtgaatagagactcccac-ttacctcaacaatcaacaaataaaatctctccaatgaatgggtctctctccaatctcctcctctagccttctagagttc |
298 |
Q |
| |
|
||||||||||| |||||||| |||||||||||||| |||||| || ||||| |||||||||||||| || |||||| | | |||||||| ||| |||| |
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| T |
3379062 |
atgtgaatagaaactcccaccttacctcaacaatccacaaatcaagcctctcaaatgaatgggtctcacttcaatcttcacttctagcctcctaaggttc |
3379161 |
T |
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| Q |
299 |
ttct |
302 |
Q |
| |
|
|||| |
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|
| T |
3379162 |
ttct |
3379165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0688 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: scaffold0688
Description:
Target: scaffold0688; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 199 - 304
Target Start/End: Complemental strand, 6193 - 6089
Alignment:
| Q |
199 |
catgtgaatagagactcccacttacctcaacaatcaacaaataaaatctctccaatgaatgggtctctctccaatctcctcctctagccttctagagttc |
298 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||||||| || ||| || |||||||||||||| |||||||| || |||||||| ||||||||| |
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| T |
6193 |
catgtgaatagagactcccccttacctctacaatcaacaaagcaagcctcccctatgaatgggtctctatccaatct-ttcttctagcctcctagagttc |
6095 |
T |
|
| Q |
299 |
ttcttc |
304 |
Q |
| |
|
|||||| |
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|
| T |
6094 |
ttcttc |
6089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 324
Target Start/End: Complemental strand, 9841700 - 9841571
Alignment:
| Q |
199 |
catgtgaatagagact-cccacttacctcaacaatcaacaaataaaatctctccaatgaatgggtctctctccaatctcctcctctagccttctaga--- |
294 |
Q |
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||||| |||||||||| ||| |||||||||| ||||| |||| || ||||| |||||| |||||||||||||||| ||| ||||| || ||||| |
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| T |
9841700 |
catgttaatagagacttcccccttacctcaagaatcaccaaagctaacctctcttatgaatcggtctctctccaatcttctcttctagtctcctagaaat |
9841601 |
T |
|
| Q |
295 |
gttcttcttcaccactttagatcccctttg |
324 |
Q |
| |
|
|||||||||||||| |||||||||||||| |
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|
| T |
9841600 |
cttcttcttcaccaccttagatcccctttg |
9841571 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 324
Target Start/End: Complemental strand, 9848846 - 9848717
Alignment:
| Q |
199 |
catgtgaatagagactcccac-ttacctcaacaatcaacaaataaaatctctccaatgaatgggtctctctccaatctcctcctctagccttctagagtt |
297 |
Q |
| |
|
||||||||||||||||||| | ||| ||||| |||| |||| || |||||| |||||||||||||| || ||||| | | |||||||| |||||||| |
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|
| T |
9848846 |
catgtgaatagagactccctccttatctcaagaatcgccaaagctaacctctcctatgaatgggtctctatctaatcttcacttctagcctcctagagtt |
9848747 |
T |
|
| Q |
298 |
ctt---cttcaccactttagatcccctttg |
324 |
Q |
| |
|
||| ||||||||| |||||||||||||| |
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|
| T |
9848746 |
cttcttcttcaccaccttagatcccctttg |
9848717 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 199 - 275
Target Start/End: Original strand, 9863194 - 9863270
Alignment:
| Q |
199 |
catgtgaatagagactcccacttacctcaacaatcaacaaataaaatctctccaatgaatgggtctctctccaatct |
275 |
Q |
| |
|
||||||||||||||| |||| ||||||||| |||| |||| || |||||| |||||||| ||||| |||||||| |
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|
| T |
9863194 |
catgtgaatagagacccccatttacctcaagaatcgccaaagctaagctctcctatgaatggatctctatccaatct |
9863270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 32; Significance: 0.000000007; HSPs: 2)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 43409 - 43358
Alignment:
| Q |
253 |
atgaatgggtctctctccaatctcctcctctagccttctagagttcttcttc |
304 |
Q |
| |
|
|||||||||||| ||||||||| ||| |||||||| ||||||||||||||| |
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|
| T |
43409 |
atgaatgggtcttcctccaatcttctcttctagcctcctagagttcttcttc |
43358 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 253 - 304
Target Start/End: Complemental strand, 51198 - 51147
Alignment:
| Q |
253 |
atgaatgggtctctctccaatctcctcctctagccttctagagttcttcttc |
304 |
Q |
| |
|
|||||||||||| |||||||||| || |||||||| ||||||||||||||| |
|
|
| T |
51198 |
atgaatgggtctttctccaatcttttcttctagcctcctagagttcttcttc |
51147 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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