View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0821_low_49 (Length: 331)
Name: NF0821_low_49
Description: NF0821
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0821_low_49 |
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Alignment Details
Target: chr8 (Bit Score: 230; Significance: 1e-127; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 230; E-Value: 1e-127
Query Start/End: Original strand, 16 - 265
Target Start/End: Complemental strand, 2189276 - 2189027
Alignment:
| Q |
16 |
atagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaaccaact |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2189276 |
atagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcctcggaaaccaact |
2189177 |
T |
|
| Q |
116 |
gccatatctcataatggccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaaca |
215 |
Q |
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||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2189176 |
gccatatctcataatggccgtttttagtatttgaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaaca |
2189077 |
T |
|
| Q |
216 |
tacaagtggcagctcaacatctccccattatcgaggccttctcccaagcc |
265 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
2189076 |
tacaagtggcagctcaacacctccccattatcgaggccttctcccaagcc |
2189027 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 36614166 - 36614415
Alignment:
| Q |
16 |
atagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaaccaact |
115 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
36614166 |
atagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcctcggaaaccaact |
36614265 |
T |
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| Q |
116 |
gccatatctcataatggccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaaca |
215 |
Q |
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| T |
36614266 |
gccatatctcataatggccgtttttagtattggaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaaca |
36614365 |
T |
|
| Q |
216 |
tacaagtggcagctcaacatctccccattatcgaggccttctcccaagcc |
265 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36614366 |
tacaagtggcagctcaacacctccccattatcgaggccttctcccaagcc |
36614415 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 16 - 265
Target Start/End: Original strand, 36647826 - 36648076
Alignment:
| Q |
16 |
atagcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatgggaaagcaaccattgagaagaataatcatcggaaaccaact |
115 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
36647826 |
atagcatgattttgatgacttcatgattgggtttggtggaagcagcatatccaataatgggaaagcaagcattgagaagaataatcctcggaaaccaact |
36647925 |
T |
|
| Q |
116 |
gccatatctcataatgg-ccgtttttagaatttgaaagcataacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaac |
214 |
Q |
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|||||||||||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36647926 |
gccatatctcataatgatccgtttttagtatttgaaagcacaacatcttcaaaatcattcctggactcattagagcaaatcactaagaatggttctaaac |
36648025 |
T |
|
| Q |
215 |
atacaagtggcagctcaacatctccccattatcgaggccttctcccaagcc |
265 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
36648026 |
atacaagtggcagctcaacacctccccattatcgaggccttctcccaagcc |
36648076 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 82; Significance: 1e-38; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 40224323 - 40224122
Alignment:
| Q |
75 |
ggaaagcaaccattgagaagaataatcatcggaaaccaactgccatatctcataatgg-ccgtttttagaatttgaaa---------gcataacatcttc |
164 |
Q |
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||||||| | ||||||||||||||||| ||||||||||||||||| | | ||| ||| || ||||||| |||||||| ||| | ||||||| |
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| T |
40224323 |
ggaaagctagcattgagaagaataatcctcggaaaccaactgccacaccccatgatgatccatttttagtatttgaaacttcttcaagcacagcatcttc |
40224224 |
T |
|
| Q |
165 |
aaaatcattcctggactcattagagcaaatcactaagaatggttctaaacatacaagtggcagctcaa-catctccccattatcgaggccttctcccaag |
263 |
Q |
| |
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| |||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||| || ||||||||||| ||||||| |||||||| |
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| T |
40224223 |
agaatcattcctggactcattagagcaaatcactaagaatagttcgaaacatacaagtggcagctcaagcacctccccattattgaggcctcctcccaag |
40224124 |
T |
|
| Q |
264 |
cc |
265 |
Q |
| |
|
|| |
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|
| T |
40224123 |
cc |
40224122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 268 - 326
Target Start/End: Original strand, 51805610 - 51805668
Alignment:
| Q |
268 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
326 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
51805610 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
51805668 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 40225436 - 40225379
Alignment:
| Q |
19 |
gcatgattttgatgacttcatgattaggtttggtggaagcagcatatccaataatggg |
76 |
Q |
| |
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||||||||||| |||||||||| | | ||||||||||||||| | |||||||||||| |
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| T |
40225436 |
gcatgattttggtgacttcatgtctggctttggtggaagcagcgtttccaataatggg |
40225379 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 268 - 326
Target Start/End: Complemental strand, 20017454 - 20017396
Alignment:
| Q |
268 |
agctgttgcaagtttttcaacaatccaagttcttttggaatttgacctgtgaggaaatt |
326 |
Q |
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||||||||||||||||||||||||||||| ||| |||||||||| || ||||||||| |
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|
| T |
20017454 |
agctgttgcaagtttttcaacaatccaagctctgaaggaatttgacttgcgaggaaatt |
20017396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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